Protein

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Genbank accession
ATW57970.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAWYNDGTITVTNGSKIVTGVDTQFLSNIRNGAILMIGPKLRVINDIISDTELQLEVEYDGPTQTGIVYEIIRNWQDTSPTELARRIDNFLTDRQRSMDEFVTWVNGTYNGGKNSDGKYPLTDRYGVVRLVKSPARMEYETGGPGNGGGTGDLTGAGIYLASAFGVMGGLGIDETDNINLALKDLEAKGGGKLIVRSHNGIDPIFIDGLIAIENHNITLEFASDIVYGSKGWMRISGGLAEIRRPGQTELLKLRVKSYAREDGLMVLPMRENNGSFLQVGDRITVRGENDKNGKVIEKQVTIVKEIIGDDCICTDEPDYTFEPTYPNSEFPDDWTTGTTISISVYSAMTGDIKNTDVIPVVDTAGFFPGDLVYISDARTERDVMNTTPPANLLSAAVMEICRIAAIEGNNIRLERAVRREYLTAWSAGVTKMDAIKNSHIKLRGVTWNAPQPDRKAHGAAINYGWGCTVKVDEMQGRGGRKGIGVRVAYAYDCHVLESKIYDAFSFGSAEGYGISLYYSTMCSIRFCNASGNRHNYLLQTSTSCEILDNHSNDDYISGIDLHGAGSVDCRVMRNRCSRSKSYADGVTNGGAIRNGNTSHTIGDHRTVIADNYIEGYLDTKCAAIDVSPSSQDVIVRNNDVVDCRVGFRHYKINSGISPVQRANRVTLEGNNFTRVEQILDVNNYANSVFDEVILIGNKSIENKQHFVVKNIPKVLAMENKIIRPVPTAGAHAFEFDGCGNVKAYSNYAGEAARAFKITGTAYAKLVRNMLDDCTESTGITDGGGNGTVISLQNTDVPAGGGGTAAPVKMTRIDGTLAVNATSTDPVNINTDVPSIANGLTAVQGQVSVAVGSLIEVYAIAPYVSMGGTTGPVTAHLWADGVRVATSVDRITASGGAENTGGKDFVLVGVFYATEEILDLVMKIGPNSNANTIMMNSKWGGASQPYIIVKEYPQ
Physico‐chemical
properties
protein length:953 AA
molecular weight: 103013,71510 Da
isoelectric point:5,32612
aromaticity:0,07345
hydropathy:-0,21658

Domains

Domains [InterPro]
DC_1966
ATT
1–260
DC_1966 IPR011050
DC_1256
RBD
694–953
DC_1256
ATW57970.1
1 953
Architecture
ATT
STR
RBD
ATT 1-260 | STR 468-700 | RBD 701-953
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATW57970.1
1 953
Domain Start End Length (AA) Confidence
N-terminal 1 173 173 0,9933
Central domain 174 801 629 0,9957
C-terminal 802 953 151 0,9932
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-173
Central
174-801
C-terminal
802-953

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage nickie
[NCBI] 		2048977 Uroviricota > Caudoviricetes > Nickievirus >
Host Pseudomonas syringae pv. avii
[NCBI] 		663959 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATW57970.1 [NCBI]
Genbank nucleotide accession
MG018927.1 [NCBI]
CDS location
range 31140 -> 34001
strand +
CDS
ATGGCCTGGTATAACGATGGCACTATCACCGTGACGAACGGCAGCAAAATCGTCACGGGCGTGGACACTCAGTTCCTGAGCAACATTCGCAACGGGGCGATCCTCATGATCGGCCCCAAGTTGCGGGTGATCAACGACATCATCAGCGACACCGAGCTTCAGCTTGAGGTCGAGTACGATGGCCCTACTCAGACTGGCATCGTCTACGAAATCATCCGCAACTGGCAGGACACCAGCCCGACTGAGCTTGCACGCCGGATCGACAACTTCCTGACCGACCGCCAGCGCTCGATGGACGAGTTCGTCACCTGGGTGAACGGCACCTACAACGGCGGGAAGAACAGCGACGGCAAGTACCCGCTGACTGACCGCTACGGCGTCGTTCGCCTGGTGAAGAGCCCTGCCCGGATGGAGTATGAAACCGGTGGCCCGGGTAATGGTGGCGGGACTGGCGATCTGACCGGTGCCGGCATCTACCTGGCCAGCGCGTTCGGCGTCATGGGTGGCCTGGGCATCGACGAGACTGACAACATCAACCTGGCTCTCAAAGACCTTGAAGCCAAGGGTGGCGGCAAGCTGATCGTTCGCAGCCACAACGGTATCGACCCGATCTTCATCGACGGTCTGATCGCCATCGAGAACCACAACATTACCCTGGAGTTCGCCAGCGACATCGTCTATGGCTCGAAGGGCTGGATGCGTATCTCTGGTGGCCTGGCTGAGATTCGCCGCCCAGGGCAGACTGAGCTGCTGAAGCTCCGGGTCAAGAGCTACGCCCGCGAAGACGGTCTGATGGTTCTGCCAATGCGGGAGAACAACGGTTCGTTCCTGCAAGTCGGTGATCGAATCACCGTTCGTGGTGAGAACGACAAGAACGGCAAGGTGATCGAGAAGCAGGTGACCATCGTCAAGGAGATTATCGGAGACGACTGCATCTGCACCGACGAGCCGGACTACACCTTCGAGCCGACCTACCCTAACTCCGAGTTCCCTGACGACTGGACGACCGGTACGACTATCTCGATCAGCGTCTACTCGGCCATGACTGGCGACATCAAGAACACCGACGTGATTCCTGTTGTAGACACAGCCGGCTTCTTCCCGGGTGACCTGGTGTACATCAGCGATGCCCGTACCGAGCGGGACGTAATGAACACCACGCCGCCGGCGAACCTGCTGTCTGCTGCGGTCATGGAAATCTGCCGTATCGCCGCCATCGAAGGCAACAACATCCGCCTTGAGCGCGCAGTCCGTCGTGAGTACCTGACTGCCTGGTCTGCTGGTGTGACCAAGATGGACGCCATCAAGAACAGCCACATCAAGCTGCGCGGTGTGACCTGGAACGCACCACAGCCAGATCGGAAAGCGCACGGCGCCGCGATCAACTACGGCTGGGGCTGCACCGTCAAGGTCGACGAAATGCAAGGTCGCGGTGGCCGGAAAGGTATCGGTGTGCGTGTTGCCTACGCCTACGACTGCCACGTTCTGGAGTCCAAGATTTACGACGCCTTCAGCTTTGGTTCGGCCGAAGGCTACGGCATCAGCTTGTACTACTCGACCATGTGCTCGATTCGCTTCTGCAACGCCAGCGGCAACCGTCACAACTACCTGCTTCAGACCTCGACTTCGTGTGAAATCCTCGACAACCACTCGAACGATGACTACATCAGCGGGATCGACTTGCACGGTGCCGGCTCTGTTGACTGCCGTGTGATGCGCAACCGTTGCTCGCGCTCGAAGTCGTATGCGGACGGTGTGACCAACGGCGGCGCGATTCGTAACGGCAACACCTCGCACACCATCGGCGACCACCGCACTGTGATTGCGGACAACTACATCGAAGGCTACCTGGACACCAAGTGTGCAGCCATCGACGTGTCCCCGTCCTCGCAAGACGTGATCGTCCGCAACAACGATGTCGTGGACTGCCGCGTAGGCTTCCGTCACTACAAGATCAACAGCGGCATCAGCCCTGTTCAGCGAGCCAACCGTGTGACCCTGGAAGGGAACAACTTCACTCGGGTCGAGCAGATTCTGGACGTGAACAACTACGCCAACTCGGTCTTCGACGAGGTGATCCTGATCGGCAACAAGTCCATCGAGAACAAGCAGCACTTCGTGGTGAAGAACATCCCGAAAGTCCTGGCGATGGAGAACAAGATCATCCGCCCAGTACCGACGGCCGGCGCGCACGCATTCGAGTTCGACGGCTGCGGTAACGTGAAGGCTTACAGCAACTACGCCGGTGAAGCTGCGCGTGCGTTCAAGATCACCGGCACCGCCTATGCGAAGCTGGTCCGCAACATGCTGGATGACTGCACCGAATCGACCGGTATCACTGACGGTGGCGGTAACGGAACTGTGATCAGCCTTCAGAACACCGACGTGCCAGCAGGTGGCGGTGGTACTGCGGCGCCGGTGAAGATGACTCGCATCGACGGCACCCTGGCTGTTAACGCAACCAGCACCGACCCGGTGAACATCAACACCGACGTGCCGAGCATCGCAAACGGCCTGACAGCCGTTCAGGGGCAGGTAAGTGTCGCAGTCGGGAGTTTGATCGAGGTCTACGCAATCGCCCCGTATGTGAGCATGGGCGGAACTACAGGCCCGGTGACTGCGCATCTGTGGGCAGATGGGGTTCGGGTAGCAACTTCGGTTGACCGCATCACTGCATCCGGCGGCGCAGAGAACACCGGTGGTAAAGACTTCGTCCTGGTCGGGGTGTTCTACGCCACTGAGGAAATTCTGGACCTGGTGATGAAGATCGGCCCGAACAGCAACGCCAACACCATCATGATGAACAGCAAGTGGGGCGGCGCGAGCCAGCCATACATCATCGTTAAGGAGTACCCGCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
924eb9c6a7a0c237aa9de6a261774e1ad60a7f8fd4557b969dec33a7831cf215
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7640
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50