Protein

View in Explore
Genbank accession
XOE89724.1 [GenBank]
Protein name
packaged DNA stabilization protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIITGYVFSDDENPPAEGDDHGLRSSAVSAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAISRAKRAPYPSRMPTGSGNSFANLNEWHYFPENRMPIQQLPMMKGMGKDFKNADYIDYLPVNMLATPKEILNSSGYLRSFPGITKRYDMNGVSRGVEYNTAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPADSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTAGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTAEEMATGVMETLRFDSHELLIIHLPRHVLVYDASSSQNGPQWCVLKTGLYDDVYRGVDFMYEGNQITCGDKSEAVVGQLQFDISSQYDKQQEHLLFTPLFKADNARCFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVLWKRVGRIRRLIGFKLRVITKSPVTLSGCQIRLE
Physico‐chemical
properties
protein length:625 AA
molecular weight: 69252,26770 Da
isoelectric point:5,72297
aromaticity:0,10240
hydropathy:-0,33040

Domains

Domains [InterPro]
IPR038258
ATT
1–150
IPR038258 IPR021098
G3DSA:1.10.3230.20:FF:000001
Unmapped
1–150
G3DSA:1.10.3230.20:FF:000001
XOE89724.1
1 625
Architecture
ATT
STR
ATT 1-150 | STR 157-625
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOE89724.1
1 625
Domain Start End Length (AA) Confidence
N-terminal 1 261 261 0,7155
Central domain 262 460 200 0,1541
C-terminal 461 625 164 0,5348
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-261
Central
262-460
C-terminal
461-625

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage As3
[NCBI] 		3388311 No lineage information
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOE89724.1 [NCBI]
Genbank nucleotide accession
PQ793798 [NCBI]
CDS location
range 6304 -> 8181
strand +
CDS
ATGCAGATAAAGACTAAAGGCGATCTGGTCAGGGCTGCGCTTCGTAAGTTGGGCGTGGCATCAGATGCAACCCTTACCGATGTCGAACCTCAGTCTATGCAGGATGCCGTTGATGATCTGGAAGCGATGATGGCGGAGTGGTATCAGGACGGGAAAGGCATCATTACCGGTTATGTATTCTCAGATGATGAGAATCCTCCCGCTGAAGGTGATGATCACGGCCTTCGCTCAAGCGCAGTCAGCGCGGTATTCCACAATCTTGCCTGCCGCATTGCTCCTGATTATGCGCTTGAGGCTACTGCCAAAATTATCGCCACTGCTAAATACGGAAAAGAGCTTCTCTATAAGCAAACCGCCATTTCCAGAGCAAAAAGAGCGCCTTACCCATCACGTATGCCAACTGGCAGTGGAAACAGTTTCGCCAATCTGAACGAATGGCATTATTTCCCGGAGAACAGAATGCCGATTCAACAACTCCCCATGATGAAGGGAATGGGTAAAGACTTCAAGAACGCCGATTATATCGACTATCTGCCAGTGAATATGCTGGCAACACCCAAAGAAATCCTTAACAGCAGCGGCTATCTCCGCTCATTCCCTGGCATTACCAAACGTTATGATATGAACGGCGTATCGCGTGGAGTTGAGTACAACACCGCTCAGAATGCTGTTTATCGTGTTTGTGGTGGCAAGCTCTACAAAGGAGAAAGCGAAGTTGGTGATGTTGCCGGAAGTGGTCGCGTATCAATGGCACATGGTCGGACATCACAGGCGGTAGGCGTTAATGGCCAACTGGTCGAGTATCGCTATGATGGCACGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACGCAGTATGAGTTAGGTTCAGTGCGTGACATTACGCGCTTACGTGGGCGTTATGCGTGGTCAAAAGACGGCACTGATTCATGGTTTATCACTGACCTCGAAGATGAATCGCATCCTGACCGCTACAGCGCACAATATCGCGCAGAGTCGCAGCCTGACGGCATCATCGGCATCGGAACATGGAGAGACTTCATCGTCTGCTTTGGTTCGTCAACGATAGAGTATTTCTCCCTGACAGGCGCAACCACCGCTGGCGCTGCGTTGTATGTCGCACAGCCATCGTTGATGGTACAGAAGGGCATTGCCGGAACATACTGTAAAACGCCGTTCGCTGATTCATACGCCTTTATCAGTCATCCGGCTACTGGCGCACCTTCCGTCTACATCATCGGTTCAGGGCAGGCATCGCCAATTGCGACCGCCAGTATTGAGAAAATTATCCGCTCATATACCGCTGAAGAAATGGCGACGGGTGTGATGGAGACTTTGCGCTTCGATTCTCATGAGCTTCTGATTATTCATCTCCCTCGCCATGTTCTGGTTTACGACGCATCGTCCAGCCAGAACGGACCTCAGTGGTGTGTGCTGAAAACCGGGCTTTACGATGATGTATATCGCGGCGTCGACTTCATGTACGAAGGAAACCAGATAACGTGCGGCGACAAATCAGAAGCGGTGGTCGGACAATTGCAATTCGACATCAGCAGCCAGTACGACAAACAACAAGAACACCTACTGTTTACGCCCCTTTTCAAAGCAGATAACGCCAGATGCTTCGACCTTGAGGTTGAATCATCCACTGGTGTTGCTCAATACGCTGACCGCCTGTTCCTGTCTGCAACAACTGACGGCATCAATTACGGTCGTGAACAGATGATTGAGCAGAACGAGCCGTTTGTGTACGACAAGCGCGTTTTATGGAAACGTGTTGGGCGCATTCGTCGATTAATCGGATTCAAACTGCGAGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
561500ab35e65aa8677f3c310baf2dd1944e5e2db35f04e41b36e0472bc33778
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Surface-mediated Bacteriophage Defense Incurs Fitness Tradeoffs for Interbacterial Antagonism Tsai,C.E., Wang,F.Q., Yang,C.W., Yang,L.L., Nguyen,T.V., Chen,Y.C., Chen,P.Y., Hwang,I.S. and Ting,S.Y. — — GenBank