Protein

View in Explore
Genbank accession
YP_008853795.1 [GenBank]
Protein name
head closure Hc3
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAQIPIASGAYTDVGAEFRTSYPRNLVPVIKNTGIGKMFLRSAEGLTRFDVGAPDLTGHDRGAIAWQGVCYRVIGTNFVSVNAVGGVTVLGQLPDDGNPVVMAHGYTNQGIAIISAKTLWFYTVQTPTTGATLQAPKLQQCTDPSVGKPIDMLWIAGYFALSDGTTCYLTQLANQFTFNTQLFGNDSNSGDPLNALLKFRNELYMCNRYTIAVFDNTGGAGFPFTENTGATIQKGVIGPYAKTNTSQGFAFVGGAEDEAPSVWLSVGLGVATKIATREVEMVLAQYTEAVLYGNVSLDYRAEKDQQFIYLNLPDYTFVYDVAGSQVAQQPIWFMLDSSADGNGSWRAWHPVYCYGKFLFGDKLDQRVGYLDSTIAAQYGTNARWQFDTVFAHNQGKGLIVTTMELIGTFGHAALGETDTMSMQYTNDGRIWSTPRYISMGSQGNARQRAQWRPKHFFRNFRGYRFAGFNAAPISFAALQAEAEPLGA
Physico‐chemical
properties
protein length:487 AA
molecular weight: 53212,31470 Da
isoelectric point:5,90503
aromaticity:0,12731
hydropathy:-0,12115

Domains

Domains [InterPro]
IPR021098
STR
3–481
IPR021098
IPR021098
STR
3–483
IPR021098
YP_008853795.1
1 487
Architecture
STR
STR 3-483 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008853795.1
1 487
Domain Start End Length (AA) Confidence
N-terminal 1 379 379 0,7534
Central domain 380 476 98 0,0719
C-terminal 477 487 10 0,9926
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-379
Central
380-476
C-terminal
477-487

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSK1
[NCBI] 		1417599 Uroviricota > Caudoviricetes > Firingavirus >
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008853795.1 [NCBI]
Genbank nucleotide accession
NC_022915 [NCBI]
CDS location
range 8735 -> 10198
strand +
CDS
ATGGCGCAGATCCCGATCGCCTCTGGCGCCTACACCGACGTTGGTGCGGAATTCCGCACCTCGTACCCGCGCAACCTGGTTCCGGTCATCAAGAATACTGGCATCGGCAAGATGTTCCTGCGCTCTGCCGAGGGGCTCACTCGATTCGATGTGGGCGCGCCGGACCTCACTGGACATGACCGTGGTGCCATCGCCTGGCAGGGCGTCTGCTATCGCGTGATCGGGACGAATTTCGTTTCCGTCAACGCGGTCGGCGGTGTGACGGTGCTCGGGCAATTGCCGGATGACGGCAATCCGGTGGTGATGGCACATGGCTACACAAACCAGGGCATCGCGATCATCAGCGCGAAGACGCTGTGGTTCTATACCGTCCAGACGCCGACCACAGGCGCCACACTGCAGGCACCAAAGCTCCAGCAGTGCACAGACCCCAGTGTGGGCAAGCCTATCGATATGCTGTGGATCGCCGGCTATTTCGCGCTGTCGGATGGCACAACCTGCTACCTCACACAGCTCGCGAACCAGTTCACGTTCAATACGCAGCTGTTCGGCAACGACAGCAATTCAGGCGATCCGCTCAATGCGTTGCTGAAGTTCCGCAATGAGCTGTACATGTGCAATCGCTACACCATCGCAGTGTTCGATAACACGGGGGGTGCCGGTTTTCCGTTCACAGAGAACACTGGCGCGACGATCCAGAAGGGAGTCATCGGCCCATATGCCAAGACGAACACCAGCCAGGGGTTCGCGTTTGTCGGCGGCGCTGAAGACGAAGCTCCGAGCGTTTGGCTGTCCGTTGGCCTCGGTGTAGCCACGAAGATCGCAACGCGCGAAGTCGAAATGGTGCTCGCGCAATACACGGAGGCGGTGCTGTATGGAAACGTGTCATTAGACTATCGCGCAGAGAAAGACCAGCAGTTCATCTACCTGAACCTACCGGACTACACATTCGTCTATGACGTGGCCGGCTCGCAGGTGGCGCAGCAACCCATCTGGTTCATGCTGGACTCCAGCGCCGACGGCAACGGTTCTTGGCGCGCATGGCATCCGGTCTATTGCTACGGGAAGTTCCTGTTCGGCGACAAACTCGATCAGCGCGTGGGCTATCTCGATTCCACAATAGCCGCGCAGTACGGCACGAATGCCCGCTGGCAGTTCGACACGGTATTCGCTCACAACCAGGGCAAGGGTCTCATCGTGACGACCATGGAGCTGATCGGCACATTCGGGCATGCCGCTCTAGGTGAGACTGACACGATGAGCATGCAATACACCAACGACGGCCGCATATGGAGCACGCCGCGCTACATTTCGATGGGCTCGCAAGGGAATGCGCGCCAGCGCGCCCAGTGGCGACCCAAGCATTTCTTCAGGAACTTCCGCGGCTACCGTTTCGCAGGATTCAATGCCGCACCAATCTCATTTGCAGCGCTCCAGGCCGAGGCCGAGCCATTGGGGGCGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
8515b200ce55109e24697acf4aa378494db5004e48b6d3595323c28d88f81ad5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8737
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Dynamic genome rearrangements of T7-like phages that infect Ralstonia solanacearum Kotera,S., Fujiwara,A., Kawasaki,T., Fujie,M. and Yamada,T. 2015-02-13 — GenBank