Protein

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Genbank accession
YP_007235992.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSQNNINHISDSSSYVTFNPTGTQWPVTVVNVQQALADIGSWATVSGGLPIASETVAGISRIATSDEILAGTDDTTIVTPKKLNARLQYPQATELQFGIVKLATTADSTGFVKDDVVITPLKLGQVFNTITANTARNGTVKITSSPQAQAGTDNTTATSPARVLEMINKFAIVPGDYAPATETSIGLVYLANTAQVAAGDIRAGYAVSPYSFKNTQASTVQVGTTRLATLAELKNGESNLSVSPSILQQMDANNLTKGLVKLSVNPSTAVGTALAANANVVWKTQKINGVAFTGDINVTAEQVNAYSKPEADGRFKPINAPNGTKVVINGADNIGWANMEVARCPGDTGTYTAVINLHVKFTQNGDGQQNRYLNFNVLHNGGINQQRYVNLFNAKGGSKGHYWGFEGFTTTVIRIGPLAPNSVIVLQPTANHAFQYWGYSSTVVSN
Physico‐chemical
properties
protein length:446 AA
molecular weight: 47162,25900 Da
isoelectric point:8,43068
aromaticity:0,07399
hydropathy:-0,11928

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiR1-RT
[NCBI] 		1206558 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tegunavirus
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007235992.1 [NCBI]
Genbank nucleotide accession
NC_019909 [NCBI]
CDS location
range 92770 -> 94110
strand +
CDS
ATGTCACAAAATAATATAAATCATATTAGTGATTCATCAAGTTATGTGACATTTAACCCTACAGGTACTCAGTGGCCTGTAACGGTTGTTAATGTCCAACAAGCCTTGGCCGATATTGGTTCTTGGGCTACTGTATCTGGTGGATTACCTATTGCTTCAGAAACTGTTGCTGGTATTTCTCGTATTGCTACTAGCGACGAAATATTAGCCGGAACTGATGATACAACTATTGTTACTCCTAAGAAATTAAATGCTCGTTTACAATACCCTCAAGCAACTGAACTTCAATTTGGCATTGTTAAATTGGCTACAACTGCCGATTCAACCGGTTTTGTAAAAGATGATGTTGTTATTACGCCATTGAAATTAGGACAAGTGTTTAATACTATTACAGCTAATACTGCTCGTAACGGGACTGTTAAAATAACTTCTTCTCCACAAGCTCAAGCAGGAACTGATAATACAACAGCTACTTCTCCGGCTCGCGTATTGGAAATGATTAATAAATTCGCTATTGTTCCTGGTGATTATGCCCCAGCAACTGAAACATCTATTGGTTTAGTTTATTTGGCTAATACAGCTCAAGTTGCGGCAGGAGATATTAGAGCTGGGTATGCTGTTTCTCCATATTCGTTTAAAAATACTCAAGCAAGCACAGTTCAAGTTGGTACTACTCGTTTAGCAACTTTAGCCGAATTAAAAAATGGTGAGTCTAATCTTTCAGTGTCTCCTTCTATTTTACAACAAATGGATGCTAATAATTTGACTAAAGGCCTTGTTAAGTTATCTGTCAATCCATCAACGGCAGTCGGAACAGCCTTAGCAGCTAATGCCAATGTTGTCTGGAAAACGCAAAAAATTAATGGTGTAGCTTTTACAGGTGATATAAATGTTACGGCTGAGCAAGTGAATGCTTATTCTAAACCAGAAGCAGATGGAAGATTTAAACCTATTAATGCTCCTAATGGCACAAAAGTTGTTATTAATGGCGCAGATAACATTGGTTGGGCTAATATGGAAGTTGCTCGTTGCCCTGGCGATACAGGAACTTATACCGCTGTAATTAATTTGCATGTCAAATTTACTCAGAATGGCGATGGGCAACAAAATAGATATTTGAACTTTAACGTTTTACATAACGGTGGGATAAACCAGCAGCGATATGTGAACCTATTCAATGCCAAGGGTGGTTCTAAAGGTCATTATTGGGGCTTCGAAGGATTCACAACAACTGTAATTAGAATTGGTCCATTGGCCCCTAATTCAGTTATCGTTTTACAACCTACAGCTAACCATGCATTCCAATATTGGGGTTACTCTTCTACTGTTGTAAGTAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
398c9863667ca4b3b760cd90bd90589f129814b07159d450525cb8cbed02173e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6889
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Skurnik,M., Nawaz,A., Happonen,L., Butcher,S. and Mattinen,L. 2012 — GenBank