Protein

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Genbank accession
QBQ72026.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,61
Protein sequence
MVKTLQRRPYSGTTIAPATQLKVKLSPTGKFLWVSPFNGSSRTRKIWNGTEYVNAPGAAVEIAEYFVGWTADETYQVVVGRATGGTTRLYLRSVDPAGVLVALSSPATTVMSDTNAIRGLERITGDTFIAYGQSAICVFRIDRGTNTIVILNDSIFPDNPVRGIAGNGNDNIIVVHSGASGSVGFQTYSVNLSTGVLSPLGTKIIKAGNRINGFDYRDGKILSHSFYTISDVMFLQRDGGNALQPVPGFDATVLQSNMTSASAQTTASFIHLGFDGTEITYLDQAAPAKFWSADVTTLQKSLPFVPPTDLPSGSTNGRQYGEDISRAFVSYTDDGKTMAVTFWVAAALQGVYVYTEYEDVTTAFLADVLLPTAFIDAVAVESAQLLADVKLPSATVDLAKNGTAQLVADVKLPSAFMVTNNTLPAELVADIAVPDAFIRQRATKRNGIMVVQTL
Physico‐chemical
properties
protein length:454 AA
molecular weight: 48517,37310 Da
isoelectric point:5,51721
aromaticity:0,09031
hydropathy:0,08612

Domains

Domains [InterPro]
SSF82171
STR
23–352
SSF82171
DC_2202
RBD
343–454
DC_2202
QBQ72026.1
1 454
Architecture
STR
RBD
STR 23-352 | RBD 353-454
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ72026.1
1 454
Domain Start End Length (AA) Confidence
N-terminal 1 199 199 0,0803
Central domain 200 427 229 0,4492
C-terminal 428 454 26 0,1783
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-199
Central
200-427
C-terminal
428-454

Taxonomy

  Name Taxonomy ID Lineage
Phage Agrobacterium phage Milano
[NCBI] 		2557550 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Agrobacterium tumefaciens
[NCBI] 		358 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ72026.1 [NCBI]
Genbank nucleotide accession
MK637516 [NCBI]
CDS location
range 2552 -> 3916
strand +
CDS
ATGGTAAAAACGCTTCAGCGCCGCCCCTATAGTGGAACGACGATCGCGCCAGCGACGCAGTTGAAAGTCAAGCTTTCGCCGACGGGGAAATTCCTTTGGGTTTCCCCGTTCAACGGTTCTTCACGCACGCGGAAAATCTGGAACGGCACGGAATACGTCAACGCACCGGGCGCGGCTGTCGAGATCGCGGAATATTTCGTTGGTTGGACCGCTGACGAAACGTATCAAGTCGTCGTTGGTCGCGCGACGGGCGGAACGACGCGTCTTTACCTGCGATCGGTCGACCCTGCCGGTGTGCTTGTGGCCCTGTCGTCACCGGCAACAACCGTTATGTCGGACACGAACGCGATTCGCGGCCTTGAACGCATTACAGGTGACACGTTCATTGCCTACGGTCAGTCTGCGATTTGTGTTTTCCGTATCGATCGCGGCACGAACACGATTGTCATTTTGAACGACAGTATTTTTCCTGATAACCCGGTTCGCGGCATCGCTGGTAACGGAAACGACAACATCATTGTCGTTCACAGCGGTGCGAGTGGAAGCGTCGGATTTCAGACGTATAGTGTCAATCTTTCCACGGGTGTTCTATCGCCGTTGGGAACGAAAATCATCAAGGCCGGTAATCGTATCAACGGTTTTGATTACCGGGACGGAAAAATTCTGTCGCATTCGTTCTACACTATAAGCGACGTCATGTTCCTGCAACGTGACGGAGGGAATGCGCTTCAACCTGTTCCGGGTTTTGACGCAACCGTTCTGCAAAGCAATATGACGTCAGCAAGTGCACAAACGACGGCGTCGTTTATTCATCTTGGGTTTGACGGGACGGAAATAACTTATCTCGACCAAGCAGCCCCGGCGAAATTTTGGAGTGCGGACGTTACCACGCTTCAAAAATCTCTGCCGTTTGTTCCGCCGACCGATCTTCCTTCAGGATCGACGAACGGGCGTCAATACGGTGAAGATATCAGCCGCGCGTTCGTTTCCTACACGGATGACGGCAAGACCATGGCCGTCACGTTTTGGGTAGCTGCTGCGCTTCAGGGTGTCTATGTTTACACCGAATACGAAGACGTCACGACGGCGTTTCTCGCTGACGTGTTGTTGCCGACGGCGTTTATTGACGCGGTAGCGGTGGAATCGGCGCAACTTCTCGCTGACGTGAAACTTCCATCCGCCACGGTCGACCTAGCCAAGAATGGCACCGCGCAACTTGTCGCTGACGTCAAACTTCCTTCGGCGTTCATGGTGACTAACAATACCCTTCCGGCTGAATTGGTGGCGGATATTGCCGTTCCTGACGCCTTCATTCGGCAGCGGGCAACCAAACGAAACGGTATCATGGTGGTGCAAACGTTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
69275d3221eaa522251c494ecfc9ca88c2aeeeab2206a35a77a0dc094e3efa74
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6448
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Agrobacterium tumefaciens Myophage Milano Nittolo,T., Ravindran,A., Gonzalez,C.F. and Ramsey,J. 2019 31221656 GenBank