Protein

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Genbank accession
AFR52424.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKTYGQTKFKDIIDNTPEFAYNLEFTIGNGGNFTNILDALNYCKRYINYPNYAITLKLLNSLTINYTINIANTDFRNLILDGNGFTISKNCNSQYDTVFYGDMSIYPIIKNLTVENTNDRSFGIAFTNYHGSIFASHSVVENNLTIKNFYNGIRHACSYLFTPGLTLDNCEYGLYAFRKSDTCLDAHVNIKNCGTGIAVYNGSEVVAQGVTFAGNNTDCNISYNTPTTNGIIWK
Physico‐chemical
properties
protein length:234 AA
molecular weight: 26210,06310 Da
isoelectric point:6,04883
aromaticity:0,13675
hydropathy:-0,20342

Domains

Domains [InterPro]
DC_0378
STR
1–234
DC_0378
IPR011050
STR
26–230
IPR011050
AFR52424.1
1 234
Architecture
STR
STR 1-234
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFR52424.1
1 234
Domain Start End Length (AA) Confidence
N-terminal 1 34 34 0,8611
Central domain 35 223 190 0,9893
C-terminal 224 234 10 0,2680
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-34
Central
35-223
C-terminal
224-234

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage CP30A
[NCBI] 		1229752 Uroviricota > Caudoviricetes > Connertonviridae > Fletchervirus CP30A >
Host Campylobacter jejuni subsp. jejuni
[NCBI] 		32022 Bacteria > Proteobacteria > delta/epsilon subdivisions > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae
Host Campylobacter jejuni subsp. jejuni PT14
[NCBI] 		1201032 Bacteria > Proteobacteria > delta/epsilon subdivisions > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFR52424.1 [NCBI]
Genbank nucleotide accession
JX569801.1 [NCBI]
CDS location
range 99828 -> 100532
strand -
CDS
ATGAAAACATATGGACAAACAAAATTTAAAGATATTATAGATAATACTCCTGAATTTGCTTATAACTTGGAGTTCACTATAGGTAATGGTGGAAATTTTACAAATATACTAGACGCACTTAATTACTGTAAAAGATATATTAATTATCCTAATTATGCAATAACTTTAAAATTATTAAATAGTCTTACTATTAATTATACTATTAACATTGCAAATACAGATTTTAGAAATTTAATACTTGATGGGAATGGATTTACAATATCAAAAAATTGCAATTCACAATATGATACTGTATTTTATGGTGATATGTCTATTTACCCTATAATTAAAAATCTAACTGTTGAAAATACAAATGACAGGAGTTTTGGTATAGCATTTACTAATTATCATGGATCCATATTTGCATCACATTCAGTTGTAGAAAATAACTTAACTATTAAGAATTTTTATAATGGTATTAGACATGCATGTTCATATTTATTTACCCCAGGATTAACTTTAGATAATTGTGAATATGGATTATATGCATTTAGGAAATCAGATACTTGTTTAGATGCCCATGTAAATATTAAAAATTGTGGAACTGGTATAGCTGTTTATAATGGTTCAGAAGTTGTAGCACAAGGTGTTACTTTTGCTGGTAATAATACAGATTGTAATATAAGTTATAATACACCAACTACAAATGGAATTATTTGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
66cd8695ffd9603eca517eb74a9e8823ad66d89ff532b9448624330b1718ec68
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8456
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Recombination and diversity amongst Campylobacter bacteriophage in chickens Connerton,I.F., Siringan,P. and Cummings,N.J. 2007-03-27 — GenBank