Protein

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Genbank accession
YP_009859403.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,82
Protein sequence
MTNRVGNLSQIWAENGTATDPDLDTTHPIYQPGKYAKGWIVEKEPHQWQNFLYQVSDLKNQIAASEQVAEWDASLTYSISAVTRKGDDLYVNVSGTTLTGKDPATEAGWSLVIGVDADAVNTAEQTLNNKITTHLDADNPHNDNIHAIGGYEKEEIDDFLGSPTDPRTIVYHENLTGKVAHAETPAQVGTLPVAGGTFTGDVAFDGGITIGPGSFQKDGPDLKMSNAGGSIIMEADGDSVYGEDATGNRSEITTVANFQRQQRAVNNLFALPQSIIEVDFRAGSLSCMDIGRHTIDGGSKTPKMSDKGWEIESGFSITGLEFNIPRTDLIEYYAGDVFRRTLVESTVSLVGSLDLKDIMTRIAPDATHVQRIVVWPTLNKYQKSTLLPKYASLFLQNDTSNSPGTAWYVSKVDTNIFEMPNATAPKGAQYIGAFTWSADDVRGGRIDNTAVWTTSDDTVVKIGSVSSSGQAVVSILKAGVAVLVVKWGGMVAKLTITAK
Physico‐chemical
properties
protein length:499 AA
molecular weight: 53775,29740 Da
isoelectric point:4,80724
aromaticity:0,07816
hydropathy:-0,26954

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagM_SSEM1
[NCBI] 		2721760 Uroviricota > Caudoviricetes > Chaseviridae > Loessnervirus > Loessnervirus SSEM1
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009859403.1 [NCBI]
Genbank nucleotide accession
NC_048875.1 [NCBI]
CDS location
range 48884 -> 50383
strand +
CDS
ATGACAAATAGGGTTGGTAATCTCTCACAGATTTGGGCTGAAAACGGTACAGCAACCGACCCTGACTTGGATACAACTCATCCAATTTATCAGCCAGGCAAATACGCTAAGGGTTGGATTGTTGAGAAAGAGCCACATCAATGGCAAAACTTTCTGTATCAGGTTTCAGACCTTAAGAATCAAATTGCAGCCAGTGAGCAAGTTGCTGAATGGGATGCTTCATTAACTTATTCTATCAGTGCCGTAACTCGAAAAGGCGATGACTTGTATGTCAACGTTTCCGGAACTACGCTCACAGGTAAAGACCCTGCCACGGAAGCTGGCTGGAGTTTGGTTATTGGTGTTGATGCAGATGCTGTTAATACAGCGGAGCAAACACTTAATAATAAAATCACAACTCACTTGGATGCTGACAATCCTCATAACGATAACATCCATGCAATTGGTGGTTATGAGAAGGAAGAAATTGATGACTTCCTCGGTTCACCAACAGACCCACGAACTATCGTCTATCACGAAAACTTAACTGGTAAAGTAGCTCATGCCGAAACTCCTGCACAGGTTGGAACACTTCCTGTGGCTGGTGGTACGTTTACTGGTGATGTTGCTTTTGATGGTGGCATTACAATTGGTCCGGGTTCATTCCAAAAGGATGGCCCTGATTTGAAAATGAGTAATGCCGGTGGTTCAATCATCATGGAAGCTGATGGTGATAGTGTTTATGGTGAAGATGCAACTGGCAACAGAAGTGAAATCACAACAGTAGCAAACTTCCAAAGACAGCAACGTGCTGTGAACAATTTGTTTGCGCTTCCACAATCAATCATTGAAGTTGATTTCCGTGCTGGCAGTTTAAGCTGCATGGATATTGGACGACACACTATTGATGGTGGCAGTAAGACTCCGAAGATGTCAGACAAAGGCTGGGAGATTGAATCTGGATTCTCAATCACTGGATTGGAATTCAACATTCCTCGCACTGACTTAATCGAATATTATGCTGGCGATGTGTTCAGACGCACTCTGGTTGAATCCACAGTTTCACTTGTTGGTTCGCTGGACTTGAAAGATATCATGACGCGTATTGCGCCAGATGCCACTCATGTTCAACGAATTGTTGTTTGGCCTACTCTGAACAAATATCAGAAGTCAACACTGCTTCCGAAGTATGCTTCATTGTTCTTGCAAAACGATACTTCGAATTCTCCAGGAACTGCTTGGTATGTCAGCAAAGTTGACACCAACATTTTCGAAATGCCTAATGCAACTGCTCCGAAAGGTGCTCAGTATATTGGTGCATTTACGTGGAGTGCTGACGATGTTCGTGGTGGTCGAATCGACAACACTGCTGTGTGGACAACTTCGGATGACACGGTCGTTAAGATTGGAAGCGTCTCAAGTTCAGGGCAGGCTGTAGTCAGTATCCTTAAAGCTGGTGTTGCTGTTCTCGTTGTTAAATGGGGCGGCATGGTTGCCAAGCTAACAATCACTGCGAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c9df072a32407b73d6106b9be723e578790871d3badbcfcd285b571e1af072c9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5794
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea agglomerans bacteriophage vB_PagM_SSEM1 Truncaite,L., Alijosius,L., Petrauskaite,E. and Simoliunas,E. 2012-05 — GenBank