Protein

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Genbank accession
YP_007672982.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,73
Protein sequence
MSFSFGSNPVYVDEGQTIRLRFKAPSAWNTTQTVTVQIGDQTTLWYIVTIPEDFAPDPFAFSDLEEVDKNTLFTWADGTRAGEASIVITGLTTNTEASVNIYSSFYSSSVDDFAVRVQRVSQGETVYGAWTIPTLSNAIVVSNTDKLQVRLRSSQSEGSQTYLSLAVGARTERWNITTFVRPPNVPEPFPNFTDIINQPFDTRVYSEILRVTGLNAPALVVTSGNALAGVSDNNDFITDDNNFDVLAENGSAVTFNNATTTTVTITNGQYLQLAYNTGTNANVSVENLLSIGEGINLSSWNVTTGNFPSTTPGAFSFPDVANQPVDTQIESAIAPVNGITGLGAGTTVQATLVSTNPGSNYLTSRVRVHRADGSVTSKATFPVDVQNGDKLQIYTQSSPNNNATTGMIIKVGTRTISSWDITTELGADTDANYTTPSNLTGQPTGKSVASATVIVTGINRPIQIDASGYGKISIDFAAPVEGPVTFDPDVNTGFRVFLVTGTTLNNVITTNVTVGTGSGNTFAWSATTWASEPAAPELRGTWYAKKNAKVYYDASNSANVVVESKDDGMAIGTVLTILKQSLGPGRNTSPAAWVSDTYGDLSGGRDSRYPGYLACDGESYNVADYLDLFLVIGNQYGGTGNWDETTNTATGNFKVPDYRNRKLAGTGRVDGNAGSSAFLPSPSTFEPGNIGGWWYIDNVDVTTGDPTGTGQQSTPFQQWIGSGDTSDESIFFDIGTVKTVFNEPIQEDVDFTVTGNVNAIIGPLLDARVNTPAHSHFVVSAQTGPSQDPLIPWNARILGWQIRIDDDEMLGLGQGAWIDADLGDEYWQDRGDPADFAQRWKGKIDDYAGGEFSATMSRFFRGNTGETFEEFLERIAPSLPDAANNTFSGSAAWAKDWSMSVWWPHHVENGVRDRLQLVGSSEWTGSTYPFNNLVNQAPASAPAAAVGAGPGQSVAGGVLAGAVIDVDESQARVESYTPQIMLEDLDASVETHSHFLTTQAVTDINTDFSYGNVSGVGSARRGLGNAGTTINIGFTQSDVDVALNSGTFTLNESFKKPIPNVTFKPNKKVPLVENFHKVKYIIKAY
Physico‐chemical
properties
protein length:1085 AA
molecular weight: 116245,48310 Da
isoelectric point:4,45285
aromaticity:0,09770
hydropathy:-0,24820

Domains

Domains [InterPro]
DC_0346
STR
1–1069
DC_0346
IPR037053
ATT
561–659
IPR037053
SSF88874
STR
610–667
SSF88874
IPR011083
ATT
610–661
IPR011083
YP_007672982.1
1 1085
Architecture
STR
ATT
STR
STR 1-560 | ATT 561-661 | STR 662-1069 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007672982.1
1 1085
Domain Start End Length (AA) Confidence
N-terminal 1 686 686 0,8029
Central domain 687 905 220 0,5858
C-terminal 906 1085 179 0,6856
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-686
Central
687-905
C-terminal
906-1085

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CAM1
[NCBI] 		754037 Uroviricota > Caudoviricetes > Pantevenvirales > Anaposvirus > Anaposvirus socalone
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007672982.1 [NCBI]
Genbank nucleotide accession
NC_020837.1 [NCBI]
CDS location
range 51186 -> 54443
strand -
CDS
ATGAGCTTTTCATTCGGATCAAACCCAGTATATGTAGATGAAGGACAAACGATCCGATTAAGGTTCAAAGCTCCTTCAGCATGGAATACAACGCAGACGGTTACGGTTCAGATCGGTGATCAAACCACACTCTGGTATATTGTCACGATACCAGAAGATTTTGCGCCAGATCCATTTGCATTTAGTGACCTTGAAGAGGTAGATAAGAATACTTTATTCACCTGGGCAGATGGTACTAGAGCAGGTGAAGCATCGATTGTCATCACTGGTCTAACCACAAATACAGAAGCTTCTGTTAATATCTACTCCAGTTTTTACAGTTCTAGTGTTGATGATTTTGCAGTAAGAGTCCAGCGAGTAAGTCAGGGCGAGACTGTTTATGGTGCTTGGACTATCCCTACACTATCAAATGCGATAGTTGTAAGTAATACTGACAAACTACAAGTTAGATTAAGATCTAGTCAGTCAGAAGGATCGCAAACATATCTGTCTCTTGCTGTTGGTGCGAGAACAGAAAGATGGAATATCACTACGTTTGTTAGACCACCTAACGTACCAGAACCATTCCCTAATTTCACTGATATTATTAATCAACCATTTGATACTAGGGTATACAGTGAGATCTTGAGGGTAACTGGACTGAATGCTCCTGCTCTTGTGGTCACTAGTGGTAATGCTTTAGCTGGTGTTTCTGATAACAATGATTTTATTACGGATGATAATAATTTTGATGTCCTGGCAGAAAATGGATCAGCAGTTACATTCAACAATGCGACTACGACAACTGTAACCATTACTAATGGACAGTATCTACAACTAGCATATAATACTGGTACAAATGCTAACGTCAGTGTTGAAAATCTTCTCTCAATTGGTGAGGGTATTAATCTATCCAGTTGGAATGTCACCACTGGTAACTTCCCATCAACAACACCAGGAGCGTTTAGTTTCCCTGATGTAGCTAATCAACCAGTTGATACACAAATTGAATCTGCGATTGCACCTGTTAATGGTATTACTGGTCTTGGTGCTGGTACAACAGTACAAGCAACACTTGTTTCTACTAATCCTGGTAGCAACTATTTGACATCTCGTGTTAGAGTACATAGAGCAGATGGTAGTGTTACTTCAAAGGCTACCTTCCCTGTTGATGTACAGAATGGTGACAAATTACAGATTTATACCCAATCATCCCCAAATAATAATGCTACTACAGGCATGATTATTAAGGTGGGAACTAGAACTATTTCTAGTTGGGATATCACTACAGAACTGGGTGCAGATACAGATGCAAACTATACAACACCATCGAATCTGACTGGTCAACCTACAGGTAAGTCTGTTGCTAGTGCTACTGTTATTGTCACTGGCATCAACAGACCTATTCAGATTGATGCTTCTGGTTATGGTAAGATCTCTATTGACTTCGCTGCACCAGTCGAGGGACCAGTGACATTTGATCCAGATGTAAATACAGGATTCAGAGTATTTTTAGTCACTGGAACAACTCTCAACAATGTAATAACTACTAATGTTACTGTTGGTACTGGTAGCGGTAACACATTTGCGTGGTCTGCAACCACCTGGGCATCAGAACCAGCAGCACCAGAATTGAGAGGCACCTGGTATGCCAAGAAAAACGCAAAAGTTTATTACGATGCTTCCAATTCTGCCAATGTTGTGGTAGAATCAAAGGACGATGGAATGGCAATCGGAACAGTTCTTACTATTCTGAAACAATCCCTCGGTCCTGGTAGAAATACCTCTCCTGCAGCATGGGTAAGTGATACATATGGTGATCTTTCGGGTGGTCGTGACTCTCGTTATCCTGGGTATTTGGCTTGCGATGGTGAATCATATAACGTCGCAGACTATCTCGATCTCTTTCTCGTAATTGGTAATCAATATGGGGGTACTGGTAATTGGGATGAAACCACAAATACAGCGACTGGTAACTTCAAAGTTCCTGATTATAGGAACAGAAAACTAGCAGGAACTGGTAGAGTTGATGGTAACGCAGGTTCATCTGCGTTCTTGCCATCACCTAGTACATTTGAACCAGGAAATATTGGTGGATGGTGGTACATTGACAATGTTGATGTTACTACTGGAGACCCAACTGGTACTGGTCAACAAAGCACACCATTCCAGCAATGGATTGGTAGTGGTGATACATCTGATGAAAGTATATTCTTTGATATTGGCACTGTTAAAACTGTCTTCAATGAACCAATTCAAGAAGACGTTGACTTCACTGTAACTGGTAACGTTAATGCTATCATTGGTCCTCTATTGGATGCTAGAGTAAATACGCCTGCACACTCACACTTTGTTGTTTCTGCACAAACAGGTCCTTCTCAAGATCCATTAATTCCTTGGAACGCTCGTATCTTGGGATGGCAAATTCGCATCGATGATGATGAGATGTTAGGTCTGGGACAAGGTGCTTGGATTGATGCTGATTTAGGTGACGAATACTGGCAAGATAGAGGTGATCCAGCGGACTTTGCTCAAAGGTGGAAAGGGAAGATTGACGATTATGCTGGTGGTGAATTCTCGGCAACAATGTCAAGATTCTTCCGAGGCAATACTGGGGAAACATTTGAAGAATTCCTAGAAAGAATTGCACCTAGTCTCCCTGATGCTGCCAACAACACTTTTAGTGGATCCGCTGCATGGGCAAAAGACTGGAGTATGTCTGTATGGTGGCCTCACCATGTAGAAAATGGTGTTAGGGATAGATTGCAACTAGTTGGTAGCTCCGAGTGGACGGGTTCTACTTATCCGTTCAATAACTTGGTTAACCAAGCGCCCGCGTCAGCTCCTGCTGCAGCAGTGGGAGCAGGGCCAGGTCAATCAGTTGCTGGTGGTGTTCTCGCTGGTGCTGTTATTGATGTTGATGAATCACAAGCCAGAGTTGAATCTTACACCCCTCAAATTATGTTAGAAGATCTTGATGCTTCTGTAGAGACTCACAGTCACTTCTTGACAACACAAGCTGTTACTGATATCAATACTGATTTCTCTTATGGTAACGTTTCTGGTGTTGGTAGTGCTAGAAGAGGACTGGGCAATGCTGGTACTACTATCAACATTGGATTCACACAATCAGATGTAGATGTAGCACTAAATAGTGGTACGTTCACTTTGAATGAATCGTTTAAGAAACCTATTCCAAACGTCACATTCAAACCGAACAAAAAAGTTCCACTAGTCGAAAACTTCCACAAAGTTAAGTATATTATCAAAGCATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7921931d23d7ca3ceab024d9fc35ed11ded9563e48ce0d9abd27228be5f0c12a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5385
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-CAM1 0208SB26 Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank