Protein

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Genbank accession
YP_010053423.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MRDGDVVNVYCQPSGAIGDLIGAILKPVTKIFSFLTPKVSTPKTDTSSKTSPNTSLKAQTNIARNGEARPDNFGQIRAFPDLLQESLFEYVNNIKYVTEFMNFGLGKYDVSSVRYSESNLGSLAGASYTIYQPGEVIPVVHEPYAFDDVDGQELYGPNELNTNPPPVVIETATTTTVTEMEYVNGQFLAKIPKNDDFDYFVDLTLPHDVTFGINVSFPTVGGVTVTRDITLSGRLISATETDDGGVPPENYWYTFIIANIDYSGNQLVSSLDGVTINNNYFTISDNQAIVSGPYFSPIEGDQLWVHLQHQTNDGNDFSVLIEWWKIDDDNVQIPGTYQSMSYYKDVDRNDTFYYTIKLTPSAGTGRYAIQMRRTNNSSDTSILQLEEIHSIVTRTNVSYPDDTVVKVVVRATENATGSRDRKYNALITRHTIGYDRDTGKVRYTIAPSRSFADAVLHNWLITAGNPENTIDIVKLYEIADSLPDERLGYFDCTFDDEDKSIGERLQTICDAARVTAFWDDGVMSFSRDEKREYPATVFNTRNTQSDGYKLSYDISLPGTYDGVNVEYRDPTTNKQANVYYRITDNGIVEGEPTKAKKFDMLYIRNRYQAVDRAILECRRLIYSRRSMEIKALADGEWVNVGDMIQVVDMYDDVQQTGVIEARNGNVFTTSEQLTADDNLYVVITSSDGSVSDRLPATVTGLHTFTCNLPSDFQLNIWDGTNVQSESRYVLSTEKELDTTLWVVSQKNPGSDGTTTLTMSEYSDDMYEYAIPSS
Physico‐chemical
properties
protein length:773 AA
molecular weight: 86612,86320 Da
isoelectric point:4,49178
aromaticity:0,10479
hydropathy:-0,42329

Domains

Domains [InterPro]
DC_0118
STR
1–615
DC_0118 DC_0808
NF040662
Unmapped
301–767
NF040662
YP_010053423.1
1 773
Architecture
STR
RBD
STR 1-615 | RBD 631-772 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Segz_1
[NCBI] 		2419756 Uroviricota > Caudoviricetes > Segzyvirus >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010053423.1 [NCBI]
Genbank nucleotide accession
NC_054640 [NCBI]
CDS location
range 24997 -> 27318
strand +
CDS
TTGCGAGATGGCGACGTTGTCAACGTTTATTGTCAGCCGTCCGGCGCAATCGGCGACCTAATCGGTGCGATACTGAAGCCAGTAACGAAGATTTTCTCTTTCCTTACCCCGAAGGTATCCACGCCAAAAACGGATACCAGCTCAAAAACATCTCCGAATACCAGTCTTAAAGCGCAGACGAACATTGCGCGAAATGGCGAGGCGCGTCCTGATAATTTCGGGCAGATTCGCGCGTTTCCTGATTTGCTTCAGGAATCACTGTTTGAATATGTAAACAATATTAAGTACGTGACCGAGTTCATGAATTTTGGCCTCGGTAAATATGATGTTTCCTCTGTGCGTTACTCTGAGTCAAACCTCGGCTCTCTGGCTGGCGCGAGTTACACCATTTATCAGCCAGGAGAGGTTATCCCGGTTGTGCATGAACCTTACGCATTTGATGATGTTGATGGGCAGGAGCTCTACGGGCCAAACGAACTTAACACCAACCCTCCGCCAGTGGTCATTGAAACTGCAACAACAACCACGGTAACGGAAATGGAATACGTCAATGGTCAATTCCTTGCGAAGATACCAAAAAACGATGATTTTGATTATTTCGTTGATCTGACATTGCCGCATGATGTTACATTTGGCATTAACGTATCATTCCCTACAGTAGGTGGGGTTACTGTCACCAGAGATATAACATTGTCTGGAAGGTTGATATCAGCAACAGAAACTGACGACGGAGGTGTGCCGCCAGAAAACTACTGGTACACATTTATAATTGCCAATATAGATTACTCTGGCAATCAACTTGTATCATCACTGGATGGAGTAACCATTAACAATAATTACTTTACTATTTCTGACAATCAAGCCATTGTTTCCGGTCCATATTTTTCGCCAATTGAAGGTGATCAGTTGTGGGTGCATCTTCAGCACCAGACCAATGACGGCAACGATTTCAGTGTGCTCATTGAGTGGTGGAAGATTGACGATGATAACGTTCAGATACCAGGTACATATCAGTCGATGAGCTATTACAAGGACGTAGACCGGAATGACACATTCTACTACACGATAAAATTAACCCCATCAGCTGGCACTGGTCGCTACGCGATTCAGATGCGACGGACAAACAACAGCTCCGACACATCAATCCTCCAGCTTGAGGAGATTCATTCAATCGTTACGCGCACCAACGTTTCGTACCCAGATGACACCGTGGTTAAGGTCGTCGTGCGAGCAACAGAGAACGCCACAGGGAGTCGTGACAGGAAATATAATGCACTTATTACGCGTCATACAATCGGTTACGACCGCGACACTGGCAAGGTGCGCTACACGATTGCACCATCCCGTAGCTTTGCTGATGCTGTTTTGCATAACTGGCTAATTACCGCTGGCAATCCAGAAAACACGATAGACATCGTGAAGTTGTATGAAATTGCCGATAGCCTGCCTGATGAGAGATTGGGTTATTTCGATTGCACGTTTGATGATGAGGATAAGTCAATCGGCGAGCGCTTGCAGACCATCTGCGATGCGGCGCGTGTTACTGCATTCTGGGATGATGGAGTGATGAGCTTCTCGCGTGATGAAAAGAGAGAATATCCGGCAACTGTATTTAATACCAGAAACACGCAGAGTGACGGTTACAAGCTGAGTTATGATATCAGTCTTCCAGGCACTTATGATGGCGTTAACGTCGAATATCGCGACCCAACAACGAATAAGCAGGCCAACGTTTACTATCGCATTACAGATAATGGAATTGTCGAAGGCGAGCCAACAAAAGCAAAGAAATTCGACATGCTTTATATTCGCAATCGTTATCAGGCTGTTGACCGCGCAATTCTTGAGTGTCGTCGCCTGATTTACTCCCGTCGCAGCATGGAGATTAAGGCTCTGGCGGATGGCGAATGGGTCAACGTAGGCGACATGATTCAGGTTGTCGATATGTATGATGATGTGCAACAGACTGGCGTTATTGAAGCGCGCAACGGAAACGTATTCACGACCAGCGAGCAACTAACGGCTGATGATAATCTTTATGTTGTGATCACCAGCTCTGACGGCAGCGTATCAGACAGATTGCCAGCCACAGTAACTGGATTGCATACATTCACCTGCAACCTGCCTTCTGATTTTCAGCTAAACATATGGGATGGAACTAATGTTCAAAGCGAATCCCGTTACGTGCTGAGCACAGAGAAAGAACTGGATACCACGTTGTGGGTTGTCAGTCAGAAGAATCCGGGAAGCGACGGAACAACAACGCTGACGATGAGTGAGTACAGTGATGACATGTACGAATATGCCATTCCGTCATCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ccc56c8eaa3436b321d6fe11b53d01841d1662bfbd35190f83a565012b1858a3
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3068
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Segz_1, Complete genome sequences of 3 novel enterobacteria, Pakpunavirus like phages Yuan,S., Ma,Y. and Liu,Q. 2020-07-27 — GenBank