Protein

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Genbank accession
XPP56808.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MTKITVGTPVTAPLTPGRDDTNVWPTHTAKYGAGGLEVVETTSDRDNISDARKTDKAVLVRSDDGGLPALYEWSSGGWNKVDIGDFSGMTITDGANIFNDIVEIKLANITANQYPNDSIDSVTLTAQGSLDWATMGDPSSGSRATSVLVEPPLQTYPDPDNTGVTRLRVKEGSYEPMKAPGYLAYVDFPEKVIGKLGYHTLGHYDSAIWPTDTVVSGGGLIPTIVNEKYIGLQEYDGKDPNKTGGTDFLVAFRVAFKGHAVNAGKIKAYLAKQPAPGTSASADYLRDVNGELLVREVNYKTGDEYGYIEVLGIVNAKGLTNMSMHVEHNFSDSLLIEERAVGLSGVMVQALESKSKTGTALMQYEIDTKQNIEFNKIYYGDSIMDFNWEATHGLPMEEIQAGIGANLPDGFHFKNLSNIHIGSKDDHIYVHDAGTVCDFSLGKIFNAFDTRSLHGKEINVKATIIDKDAPFTIGVVKWTGKPDQYTNNIFSSRNSATVVFDAGWELVGSLFFPSESVTGDHTLTKKFTVPSDANNFAVIIYPGVPNSPLTLKIKDFDVDVVNPFYGYEMYVAGKLNEIHLEEDTEFAHFSQANENYVSLRYTIGKSADGDPMPVGVLRKGKADITLDPSINKIVGSAATSGEGGLKFGKDGKAIVNTTLWIHSEQPEKTASDVTFWYELVNSHGIATKIIPSETTFKVSGDSSGDYSMKEFSLDVITGDRIVLKASADKDDGAFIQSNSPAHPLVDIEIRIDELTAFANDDPFTGVELDQFDKVYTGVLTATKYVSHTDSATFHIEVPDDMNVSVLEAIKKLDDGTVTTVKSLDWSYNLKSQMLTVYFGEVVEECAITLGIYTV
Physico‐chemical
properties
protein length:854 AA
molecular weight: 92974,95730 Da
isoelectric point:4,75563
aromaticity:0,09368
hydropathy:-0,23770

Domains

Domains [InterPro]
DC_0389
STR
1–854
DC_0389
XPP56808.1
1 854
Architecture
STR
STR 1-854
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPP56808.1
1 854
Domain Start End Length (AA) Confidence
N-terminal 1 351 351 0,4965
Central domain 352 564 214 0,1897
C-terminal 565 854 289 0,8656
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-351
Central
352-564
C-terminal
565-854

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Hades
[NCBI] 		3388591 Viruses >
Host Vibrio campbellii
[NCBI] 		680 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPP56808.1 [NCBI]
Genbank nucleotide accession
PQ768827.1 [NCBI]
CDS location
range 88308 -> 90872
strand +
CDS
ATGACAAAAATAACAGTTGGTACTCCAGTTACAGCACCTCTTACACCAGGTCGTGATGATACCAATGTTTGGCCAACGCACACAGCTAAATACGGTGCTGGTGGTTTGGAGGTAGTAGAGACTACCTCTGATAGAGATAACATTTCAGATGCTAGAAAAACAGATAAAGCTGTACTAGTACGTTCAGACGATGGAGGGCTGCCTGCCCTCTATGAATGGTCTTCAGGTGGCTGGAATAAAGTAGATATTGGAGATTTCTCCGGTATGACAATCACAGATGGGGCTAATATCTTTAACGATATAGTAGAAATAAAATTAGCTAATATAACAGCTAATCAGTACCCCAACGACTCAATTGACTCTGTGACACTAACGGCACAAGGATCCCTAGATTGGGCTACAATGGGTGATCCTTCCTCTGGTAGTAGAGCCACATCAGTATTAGTAGAGCCCCCTCTACAAACATACCCAGACCCAGACAACACAGGAGTTACTCGTCTTAGAGTGAAGGAAGGTTCATATGAGCCAATGAAAGCTCCAGGATACTTAGCTTACGTTGACTTCCCAGAAAAAGTAATTGGTAAACTAGGATACCATACTCTAGGTCACTACGATAGTGCTATTTGGCCAACTGATACTGTAGTATCTGGTGGTGGATTAATCCCTACTATAGTAAACGAAAAATATATCGGACTGCAAGAGTATGACGGGAAAGATCCTAATAAGACAGGTGGTACAGACTTTTTAGTAGCTTTCCGAGTTGCTTTTAAAGGTCACGCTGTAAATGCAGGTAAAATTAAAGCGTATCTAGCTAAACAACCTGCACCAGGTACTTCTGCCTCTGCTGATTATCTAAGAGATGTAAACGGTGAGTTACTAGTTAGAGAAGTTAACTATAAAACAGGGGATGAGTACGGTTATATAGAGGTACTTGGTATTGTTAATGCCAAAGGTCTTACTAACATGTCTATGCATGTTGAGCATAACTTCAGTGATAGCTTACTTATTGAAGAGCGCGCTGTAGGGCTATCTGGTGTAATGGTACAAGCACTAGAATCTAAGTCTAAAACCGGTACTGCATTAATGCAGTATGAAATAGATACTAAACAAAACATTGAGTTTAATAAAATCTATTACGGTGACAGCATTATGGATTTCAACTGGGAAGCTACTCATGGCTTACCAATGGAAGAAATCCAAGCAGGTATAGGGGCAAACCTGCCTGATGGTTTCCACTTTAAGAACCTGTCAAACATCCATATTGGTAGTAAAGATGACCACATCTATGTACACGATGCTGGTACAGTGTGTGACTTCAGTCTAGGTAAGATCTTTAATGCCTTCGATACTAGATCATTGCATGGTAAAGAAATCAACGTTAAAGCTACGATTATAGACAAAGATGCACCATTTACTATTGGTGTAGTTAAATGGACAGGAAAACCAGACCAATACACTAATAACATCTTCTCTAGCAGAAACAGTGCAACGGTTGTATTTGACGCTGGCTGGGAACTAGTAGGTTCGCTATTCTTCCCTTCAGAATCTGTAACAGGTGACCATACACTAACTAAGAAGTTTACAGTGCCTTCGGATGCTAATAACTTTGCAGTTATTATTTATCCTGGCGTACCTAACTCTCCACTTACACTGAAAATTAAAGACTTTGATGTTGATGTAGTTAATCCTTTCTACGGCTATGAAATGTATGTAGCAGGAAAGCTTAATGAAATACATCTAGAAGAAGACACTGAGTTTGCACACTTCAGTCAAGCTAACGAGAACTATGTATCTCTACGCTATACAATAGGTAAGTCAGCAGATGGTGACCCAATGCCTGTTGGTGTTTTGAGAAAAGGTAAAGCTGATATTACTCTAGACCCATCAATCAATAAAATTGTTGGCTCAGCTGCTACTAGTGGTGAGGGTGGTCTTAAATTCGGAAAAGATGGTAAAGCTATTGTTAATACCACTTTATGGATTCATTCAGAGCAACCTGAAAAGACTGCGTCAGACGTTACATTCTGGTATGAGTTAGTTAACTCTCACGGCATCGCTACTAAGATTATTCCATCAGAAACTACCTTTAAGGTTAGTGGTGACTCTTCAGGGGACTACTCAATGAAAGAGTTTTCACTTGATGTAATAACTGGCGATAGAATCGTTCTTAAAGCTTCTGCTGATAAAGATGATGGCGCATTTATTCAATCTAACTCACCAGCACACCCACTGGTTGATATTGAGATTAGAATTGATGAGTTAACCGCTTTTGCTAATGACGACCCATTTACAGGTGTAGAGCTAGATCAATTCGATAAAGTATACACCGGAGTACTTACAGCTACTAAATATGTATCGCATACTGACTCCGCTACATTCCACATTGAAGTACCAGATGATATGAATGTGTCAGTGCTAGAAGCTATTAAGAAACTAGATGATGGTACAGTAACAACAGTGAAAAGCCTAGACTGGTCTTACAACTTGAAATCACAAATGCTAACAGTGTATTTTGGTGAAGTTGTAGAGGAATGTGCTATTACTCTAGGTATTTATACAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
66b474124c699cf1b77bdbb09e0c118f67164b37900486110ea13c4bde99d312
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4696
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50