Protein
View in Explore- Genbank accession
- QPX71665.1 [GenBank]
- Protein name
- tail spike protein
- RBP type
-
TFTSP
- Protein sequence
-
MIDGVNRSTQYNVWRNGGIVVPSDVNIIMDYDTVIKVIPNDAWGYSAFYVGRASNVTIRGGQIIGDKAKPYLQYYPKQGNK
- Physico‐chemical
properties -
protein length: 81 AA molecular weight: 9071,18700 Da isoelectric point: 9,30029 aromaticity: 0,12346 hydropathy: -0,33704
Domains
Domains [InterPro]
IPR012334
STR
3–80
STR
3–80
IPR011050
STR
11–67
STR
11–67
1
81
Architecture
STR 3-80 |
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Tail Spike Domain Segmentation
Tail Spike Domain Segmentation
This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.
Domain Layout
1
81
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 10 | 10 | 0,0404 |
| Central domain | 11 | 70 | 61 | 0,9961 |
| C-terminal | 71 | 81 | 10 | 0,0658 |
Note: Constraints were applied during segmentation.
Sequence started with non-N-terminal domain|N-terminal too short, forced to 10 residues|C-terminal too short, adjusted boundary
Sequence started with non-N-terminal domain|N-terminal too short, forced to 10 residues|C-terminal too short, adjusted boundary
Legend:
N-terminal
Central domain
C-terminal
3D Structure with Domain Coloring
The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).
Domain Coloring
N-terminal
1-10
1-10
Central
11-70
11-70
C-terminal
71-81
71-81
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Bacillus phage SP8 [NCBI] |
2770327 | Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes |
| Host |
Bacillus subtilis [NCBI] |
1423 | cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
QPX71665.1
[NCBI]
Genbank nucleotide accession
MW001214.1
[NCBI]
CDS location
range 79878 -> 80123
strand +
strand +
CDS
ATGATTGATGGCGTTAATAGATCAACTCAATACAATGTATGGCGTAATGGTGGTATTGTTGTTCCTAGTGATGTCAACATCATTATGGACTATGACACAGTTATTAAGGTAATACCAAATGATGCTTGGGGGTACTCCGCATTTTATGTAGGCAGGGCATCCAATGTTACCATACGTGGAGGTCAAATTATTGGAGATAAAGCGAAACCATACCTACAATACTACCCTAAACAAGGAAACAAATGA
Genome Context
Genome Context
Tertiary structure
PDB ID
d5f462a2aa187c9537d1f636db4532314773b31b8d38c6940f9d58d49a7d26c8
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50