Protein

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Genbank accession
QGZ17851.1 [GenBank]
Protein name
putative tail collar domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSNYEATKYDFDGANLTGIEGIPTATIVPWSDSSVPTGFLECNGQAVSRSTYAALFAIVGTTYGVGDGSSTFNVPDLQDNVPVGKSNNKALASTGGANTVTSTGNVGGSTANATLSEAQLASHTHSYTTRQGNNQGGVNNTAGFSNQSVSSDAAGSGQGHSHNMSANFSGDATSVLQPYLTIIYIIKT
Physico‐chemical
properties
protein length:188 AA
molecular weight: 19142,44050 Da
isoelectric point:4,84958
aromaticity:0,07447
hydropathy:-0,25638

Domains

Domains [InterPro]
DC_1651
STR
2–188
DC_1651
IPR037053
ATT
17–77
IPR037053
SSF88874
STR
21–187
SSF88874
IPR011083
ATT
26–82
IPR011083
QGZ17851.1
1 188
Architecture
STR
ATT
STR
STR 2-16 | ATT 17-82 | STR 83-188
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ17851.1
1 188
Domain Start End Length (AA) Confidence
N-terminal 1 17 17 0,9636
Central domain 18 177 161 0,0037
C-terminal 178 188 10 0,9967
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-17
Central
18-177
C-terminal
178-188

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC027P
[NCBI] 		2686457 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ17851.1 [NCBI]
Genbank nucleotide accession
MN698241 [NCBI]
CDS location
range 41142 -> 41708
strand +
CDS
ATGTCAAATTACGAAGCAACTAAATACGATTTTGATGGAGCAAACCTTACAGGTATTGAGGGAATTCCTACGGCGACTATTGTGCCGTGGTCAGACTCATCTGTTCCAACAGGATTTTTAGAATGTAATGGTCAAGCGGTTTCAAGATCTACTTACGCAGCTTTATTTGCAATTGTAGGTACAACTTATGGAGTTGGAGATGGCTCATCAACTTTTAACGTTCCTGATTTACAAGACAACGTACCGGTTGGAAAATCTAATAACAAAGCTTTAGCTTCAACTGGTGGAGCAAACACTGTAACTTCAACTGGAAACGTTGGAGGTTCAACAGCTAATGCAACTTTATCAGAAGCACAACTTGCTTCTCACACGCATTCTTACACTACTAGACAAGGAAACAACCAAGGGGGAGTCAATAACACTGCTGGTTTTAGTAACCAATCAGTTAGTTCAGATGCTGCGGGATCAGGTCAAGGTCATTCTCATAATATGAGTGCAAATTTTTCAGGTGATGCAACTTCGGTTCTTCAACCTTATTTAACAATTATTTATATTATTAAAACGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
fd4e3e270a23dd95b68ea01c643189a289ba0ae823e8be99bc3fb69571f84e63
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6984
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank