Protein

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Genbank accession

YP_001700591.1 [GenBank]

Protein name

bacteriophage side tail fiber protein; Lambda gpSft (gpN) homolog

RBP type

Evidence GenBank

Probability 1,00

Evidence RBPdetect

Probability 0,90

Evidence RBPdetect2

Probability 0,95

Protein sequence

MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQAAESATAAVNAAGAAEASATQAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADVSRTAAGDSAAAAAASATAAQTSAARAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAASAAAAKISETNAATSASTAAASATAASSSASEASNHAAASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQTKAPLDSPVFTGTPTTPTPPDDAKGLQTANAEFVRKLIAALVGSVPESLDTLQELADALGNDPNFATTITNMIAGKQPLDDTLTALSGKSIEGLIEYVGLRSTIDKAAGALPAGGTAVAANRLASRGALPALTGTTRGSDGGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGYALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHTARAQDTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA

Physico‐chemical properties

protein length:	790 AA
molecular weight:	79312,73720 Da
isoelectric point:	4,81252
aromaticity:	0,04557
hydropathy:	-0,20291

Domains

Domains [InterPro]

IPR013609
ATT
1–134

IPR013609 DC_2257 IPR051934

IPR008969
ATT
5–80

IPR008969 Coil DC_1735 DC_0163

G3DSA:2.60.40.1120
STR
5–98

G3DSA:2.60.40.1120 IPR005068 SSF88874

IPR037053
ATT
606–658

IPR037053

IPR011083
ATT
610–657

IPR011083

YP_001700591.1

1 790

Architecture

ATT

STR

ATT

STR

ATT 1-174 | STR 236-296 | STR 303-605 | ATT 606-658 | STR 659-790

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR013609	ATT	DC_0732	1	134	InterPro cluster	Lambda-like tail fibre protein, N-terminal	N-terminal	Medium	Text match	183 proteins / 183 hits
IPR008969	ATT	IPR008969	5	80	Merged direct domain	Carboxypeptidase-like, regulatory domain superfamily	N-terminal	Low	Positional only	16 proteins / 16 hits
G3DSA:2.60.40.1120	STR	G3DSA:2.60.40.1120	5	98	Merged direct domain	G3DSA:2.60.40.1120	Central	Low	Positional only	6 proteins / 6 hits
Coil	Unmapped	-	103	123	Coils	Coil	-	-	-	-
DC_2257	ATT	DC_2257	135	174	Novel HMM	DC_2257	N-terminal	Low	Positional only	3 proteins / 3 hits
IPR051934	Unmapped	-	175	790	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
DC_1735	STR	DC_1735	236	296	Novel HMM	DC_1735	Central	Low	Positional only	31 proteins / 31 hits
DC_0163	STR	DC_0163	303	790	Novel HMM	DC_0163	Central	Low	Positional only	47 proteins / 47 hits
IPR005068	STR	DC_0738	357	396	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
SSF88874	STR	SSF88874	598	789	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	606	658	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	610	657	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Phage Gifsy-1 [NCBI]	129861	Viruses >
Host	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 [NCBI]	99287	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Genbank protein accession

YP_001700591.1 [NCBI]

Genbank nucleotide accession

NC_010392.1 [NCBI]

CDS location

range 6175 -> 8547
strand -

CDS

ATGCCAGTACTTATTTCCGGCGTACTGAAAGATGGTACGGGAACGCCGGTACAGAACTGCACCATTCAGCTGAAGGCCTGCCGGACCAGTACGACGGTGGTCGTGAATACGGTGGCATCGGAAAATCCGGATGACGCCGGGCGCTACAGCATGGATGTGGAGCAGGGGCAGTACACAGTCACGCTCCTGGTGGAAGGGTATCCCCCGTCACATGCCGGAGTTATTACGGTCTACGATGATTCAAAACCGGGCACCCTGAATGATTTTCTGGGGGCCATGACGGAAGACGACGTCCGCCCGGAGGCGCTGCGACGTTTTGAGGCGATGGTGGAAGAAGTTGCCCGCCAGGCATCGGAGGCATCGCGGAATGCCACCGCCGCAGGGCAGGCATCTGAACAGGCGCAGACATCAGCAGGTCAGGCAGCGGAAAGCGCCACGGCAGCAGTGAATGCAGCCGGAGCGGCAGAAGCATCAGCCACACAGGCAGCCTCATCCGCAGCATCTGCGGAGAGCAGCGCAGGTACGGCGACCACAAAAGCCGGGGAGGCATCAGCCAGCGCGGCGTCGGCTGACACAGCCAGAACGGCGGCAGCCGCATCGGCAGCCGCAGCGAAAACATCTGAAGCGAATGCAGATGTCTCCCGTACTGCCGCCGGCGATTCAGCTGCTGCCGCAGCCGCCAGCGCGACGGCGGCGCAGACATCAGCAGCGCGCGCCGGAGCATCCGAAACCGCCGCGAAGACGTCAGAAACGCAGGCGGCTTCCAGTGCCGGTGATGCAGGTGCGTCAGCCACTGCGGCGGCAGCGTCGGAAAAGGCGGCAGCCGCATCGGCAGCCGCAGCAAAAATATCTGAGACAAACGCTGCAACGTCAGCAAGTACAGCAGCGGCCAGCGCAACAGCCGCCTCGTCATCAGCATCGGAGGCATCCAATCACGCCGCCGCATCTGATACCAGCGCATCACTGGCGGCGCAAAGCAGTACTGCTGCCGGAGCAGCAGCCACCAGAGCAGAAGATGCCGCAAAACGGGCAGAAGACATCGCGGACGTGATTTCCCTGGAAGATGCCAGCCTGACGAAAAAAGGTATCGTTAAGTTAAGCAGCGCCACGGACAGTGACAGCGAAGCGCTGGCAGCCACGCCAAAGGCGGTCCATGCTGTCATGGACGAGGTACAGACCAAAGCGCCGCTGGACAGTCCGGTATTCACTGGAACGCCGACCACACCGACGCCGCCAGATGACGCTAAGGGACTTCAGACTGCAAACGCTGAGTTTGTTCGTAAACTGATTGCTGCACTGGTCGGTTCCGTACCTGAGTCGCTGGATACGCTGCAGGAACTGGCTGACGCGCTGGGTAACGATCCTAATTTTGCTACCACTATCACTAACATGATTGCGGGCAAGCAGCCGCTGGACGATACACTGACGGCGCTGTCAGGAAAAAGCATTGAAGGTCTTATCGAATACGTTGGTTTACGGAGCACAATTGATAAGGCTGCTGGTGCGTTGCCTGCTGGTGGTACGGCTGTCGCAGCGAACAGGCTTGCATCACGCGGCGCGCTTCCGGCACTGACTGGCACGACAAGAGGCAGCGATGGCGGCCTGATAATGGGCGAGGTCTACAACAATGGCTATCCGACGCAATACGGAAATATTTTACGTCTGACCGGAACCGGTGATGGGGAAATCCTCATTGGCTGGAGCGGGACAAATGGTGCGCCAGCGCCCGCATATATTCGCAGCCATCGAGATACCGCCGATGCTGAGTGGTCCGAATGGGCAATGCTTTACACCACACTAAACCCACCTCCGGATTCGCATCCAGTAGGGGCGGCGATTGCATGGCCATCTGATGCTACTCCGGCAGGTTACGCTCTGATGCAGGGGCAGTCCTTCGATAAATCTGCTTACCCGTTACTGGCTATAGCGTATCCGTCCGGCGTTATCCCTGACATGAGAGGCTGGACAATAAAGGGTAAGCCCATCAGTGGACGTGCCGTATTGTCGCAAGAAATGGACGGCAATAAATCGCACTCGCACACCGCGCGGGCGCAGGATACTGACTTAGGGACAAAATCTACCTCATCTTTTGATTACGGCACGAAATCGACCAATACCACGGGCAACCATACTCACCAGTTCGGCGGTTATATCAATTCATACTGGGGAGACTCCAATCACACCTCATTTCAGCCTGGAGGTGGTGCATGGACACAGGCCGCTGGCGACCATGCGCATACAGTTTATATCGGAGGACACGAGCACACCATGTATATCGGTCCACACGGTCACGTCGTTATTGTGGACGCAGACGGTAATGCGGAAACCACGGTTAAAAATATTGCATTTAACTACATAGTGAGGCTGGCATGA

Genome Context

Tertiary structure

PDB ID

edbd160f1156f82cd06c9d40b093817735367c5285ae0b4d8b9549819da72a3d

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6049

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Refined annotation of the phage genomes integrated into the Salmonella typhimurium LT2 genome	Lingohr,E.J., Villegas,A. and Kropinski,A.M.	2010-11-24	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature