Protein

View in Explore
UniProt accession
A0A088FRB3 [UniProt]
Protein name
Baseplate wedge connector for long tail fiber
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYIQTPKQLIDVGEIGNASTGDILFDGGVKINNDINAIYNAFGDQRKMATANGTGPNGQIIHATGYYQKGGPTDYFTPVPVGSRHDIDASTGGVIVTVARGELGDSVEFINSNGSISVNNPLSIQALDSIKGVAGNLVITTPYTKVTLRCISSGTGGSIWDYSTESMFSHTEIPVDGTWNIISDYVNIPLFYKTEYNAAKLLVTCQSANGRKIKSCEINILIDTINSRVISTEYAVMRVGNDNEEDEIANISFSIINNFATMTVSSHINGLRVAAKVISTQKIRVAQ
Physico‐chemical
properties
protein length:287 AA
molecular weight: 30841,33040 Da
isoelectric point:5,22330
aromaticity:0,07317
hydropathy:-0,06655

Domains

Domains [InterPro]
IPR036240
STR
1–287
IPR036240
IPR008987
ATT
7–168
IPR008987 IPR027412
G3DSA:1.20.5.960
Unmapped
17–51
G3DSA:1.20.5.960 IPR027411 IPR056391
A0A088FRB3
1 287
Architecture
ATT
STR
ATT 1-267 | STR 268-287
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A088FRB3
1 287
Domain Start End Length (AA) Confidence
N-terminal 1 51 51 0,9780
Central domain 52 250 200 0,0211
C-terminal 251 287 36 0,9991
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-51
Central
52-250
C-terminal
251-287

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Shf125875
[NCBI] 		1541825 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Mosigvirus
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIM50743.1 [NCBI]
Genbank nucleotide accession
KM407600 [NCBI]
CDS location
range 89380 -> 90243
strand +
CDS
ATGTATATTCAAACTCCAAAACAATTGATTGACGTTGGCGAAATTGGTAACGCTTCTACAGGCGATATCCTTTTTGACGGCGGTGTTAAAATAAACAATGATATAAATGCTATTTACAATGCGTTTGGTGACCAACGAAAAATGGCAACTGCTAATGGGACAGGACCAAATGGACAAATAATCCATGCTACTGGATACTACCAAAAAGGAGGTCCTACTGATTATTTCACCCCTGTTCCAGTAGGAAGTAGACACGACATAGATGCTTCCACCGGTGGTGTTATTGTTACTGTTGCTAGAGGTGAACTCGGTGATTCCGTGGAATTTATAAATTCAAACGGGTCAATTTCGGTAAACAACCCATTAAGTATCCAAGCATTAGATTCTATTAAAGGTGTTGCAGGTAATTTAGTTATAACTACACCTTATACTAAAGTTACTCTTCGTTGTATTTCTTCTGGTACAGGCGGTTCAATATGGGATTATTCTACAGAAAGTATGTTTAGTCATACCGAAATTCCTGTAGACGGGACATGGAATATTATTTCAGACTATGTCAATATTCCTCTATTTTATAAAACTGAATATAATGCTGCTAAACTTTTGGTTACATGCCAATCTGCCAACGGCAGAAAAATTAAATCATGTGAAATAAATATTCTAATAGATACAATTAATTCAAGAGTTATTTCAACCGAATACGCAGTGATGCGCGTTGGTAATGATAACGAAGAAGATGAAATTGCGAATATTAGTTTTTCGATAATTAACAATTTTGCCACTATGACAGTTTCTTCACATATAAATGGTCTTCGAGTGGCAGCTAAAGTTATTTCAACTCAGAAAATTAGGGTCGCTCAATAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0019076 viral release from host cell Biological Process IEA:InterPro (UniProt)

Tertiary structure

PDB ID
26b3b33f800b6d5aacd47afb1b11ff5fd78f194812adf96011c474d7793f6e0d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7683
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50