Protein

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Genbank accession
QVW27666.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVMSLNDLQVAKKHQIFEAEVITGKQGGVAGGADIDYATNPVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGANDADKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLATGGISDFAWDAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFTNGETVNFGGKVLTIDCKAKFIGDGALIFTNMGSGSIIEKPFMESATTPWVIYPWTEDGKWITDAQAVAATLKQSKTEGYQPGVNDWVKFPGLEALIPQNVKDQHVASTLDIRECVGIEVRSAGGLMAAYLFRNCHHCKVIDSDTIIGGKEGIITFENLSGEWGIGNYAIGGRVHYGSGSGVQFLRNNGGASHNGGVIGVTSWRAGESGFKTWQGSVGAGTARNYNLQFRDSVALSPVWDGFDLGSDPGMVPEDDRPGDLPVSQYPMHQLPNNHMVDNILVMNSLGVGLGMDGRDGYVSNVTVQDCAGAGMLAHTFNRTFSNITVIDCNYMNFDSDQIIIIGDCIVNGIRAAGIKPQPSKGMVISAPNSTLSGVVGNVPPDRILAGNIIDSALGQTRINGFNGDSVEMGLRVHKLTKTLDSGAIRSTLNGGPGSGSAWTEITAISGSLPDAVSLKINRGDYHAVEIPVAVTVLPDAAVRDNGSIALYLEGDSLKALVKRANGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72344,48430 Da
isoelectric point:5,08660
aromaticity:0,07895
hydropathy:-0,10278

Domains

Domains [InterPro]
IPR040775
RBD
71–131
IPR040775 IPR015331
IPR040775
RBD
71–130
IPR040775 IPR015331
QVW27666.1
1 684
Architecture
RBD
RBD 71-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVW27666.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9944
Central domain 156 597 443 0,9865
C-terminal 598 684 86 0,8860
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-597
C-terminal
598-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PSDA-2
[NCBI] 		2831171 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVW27666.1 [NCBI]
Genbank nucleotide accession
MW725301.1 [NCBI]
CDS location
range 16277 -> 18331
strand -
CDS
ATGTCCAGTGGTTGCGGTGATGTAATGTCACTTAACGATTTACAGGTAGCCAAGAAACACCAGATTTTCGAAGCCGAGGTTATCACCGGTAAACAAGGCGGTGTAGCCGGCGGTGCAGATATCGACTACGCCACTAACCCGGTAACCGGGCAGACGCAGAAGACGCTTCCCGCAGTCTTACGTGACGCCGGTTTCTCTCCGGCATCTTTTAACTTCACAACCGGTGGAACCCTGGGGGCTAACGACGCAGATAAAGCGGTTCTTTGGCCGAAAGAAGATGGTGGGGACGGTAACTATTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTGCGACAGGCGGCATTTCGGATTTCGCTTGGGACGCGTTCGGAGATATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAGTACTCCGTTAAGCTTTCCGACTTCACTACGTTACAGCAACTAGCGGATGCCGCTGTTGACAGCGTTCTTATCGACCGCGATTACACCTTTACCAATGGTGAAACTGTTAACTTCGGAGGGAAAGTCTTAACCATTGACTGTAAAGCTAAGTTTATTGGTGATGGGGCTTTGATTTTCACTAATATGGGTAGTGGTTCTATAATAGAAAAGCCTTTCATGGAGAGCGCTACGACCCCGTGGGTTATTTACCCCTGGACAGAAGATGGGAAGTGGATTACAGATGCACAAGCTGTCGCTGCTACACTTAAACAATCTAAGACTGAGGGGTATCAACCGGGAGTTAATGATTGGGTCAAGTTCCCTGGTCTTGAGGCATTGATACCACAGAATGTAAAAGACCAGCATGTAGCGTCCACGCTGGATATCCGTGAGTGTGTAGGTATTGAGGTCAGAAGTGCTGGTGGACTTATGGCTGCTTACTTGTTCCGCAACTGTCATCATTGTAAGGTGATTGATTCTGACACCATCATTGGTGGTAAAGAAGGCATCATCACCTTTGAAAACTTAAGTGGTGAGTGGGGCATCGGCAACTATGCCATAGGTGGCCGTGTGCATTATGGCTCAGGTAGTGGTGTGCAGTTCCTTCGAAACAACGGAGGTGCGTCGCACAATGGTGGGGTTATTGGCGTGACGTCATGGCGCGCGGGTGAGTCTGGGTTTAAAACATGGCAAGGCTCTGTAGGTGCCGGTACAGCTCGCAACTATAACCTTCAGTTCCGCGACTCAGTTGCATTATCTCCAGTGTGGGACGGCTTTGACTTAGGCTCAGACCCGGGAATGGTGCCGGAAGACGATAGACCGGGAGATTTACCTGTATCTCAATATCCTATGCATCAGCTACCTAATAACCACATGGTTGATAACATCCTTGTTATGAACTCATTAGGTGTAGGTTTAGGCATGGATGGTCGTGATGGTTATGTGTCGAATGTTACCGTGCAGGATTGTGCAGGCGCTGGTATGCTTGCTCACACATTCAACCGTACCTTCTCTAACATTACGGTGATTGACTGCAACTATATGAACTTTGATTCAGACCAGATAATCATCATTGGTGACTGTATTGTAAATGGCATCCGAGCCGCAGGCATTAAGCCTCAGCCATCCAAAGGTATGGTCATCAGCGCACCTAACTCGACCCTAAGTGGTGTTGTAGGTAACGTGCCACCAGACCGTATTCTTGCTGGTAACATTATTGACTCTGCGTTAGGACAGACAAGGATTAATGGGTTTAATGGTGACTCGGTGGAAATGGGTTTAAGAGTCCACAAGCTTACCAAAACCTTGGATAGTGGTGCTATTCGCTCTACGCTGAATGGGGGCCCCGGTTCTGGTTCCGCTTGGACTGAAATTACGGCTATATCTGGGTCATTACCGGATGCAGTATCGCTAAAAATTAACCGCGGCGACTATCACGCGGTAGAAATACCAGTAGCCGTTACCGTGCTACCCGATGCTGCCGTTAGAGATAATGGCAGCATCGCACTATACCTAGAAGGCGATAGTCTTAAAGCGTTAGTTAAGCGCGCAAATGGTAGCTACACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ded6769b38f8b02ae44bc9214a5d5310f37f1fd58ca9072a030e4070d53ad084
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6953
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization and genomic analysis of novel Salmonella phage PSDA-2 Sun,Z. 2021-06-21 — GenBank