Protein

View in Explore
Genbank accession
WAB57810.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MPLPKPDDLSVIWASIGQATKPAPNKIMTGWTNEIPPYQWHNWYFQRVDKALAHINQQGIAMWDAATTYEGGTSLAKGSDGVVYKAKRSSRGVDPVSPASNLDWEPAFERYGEAAKVNSQLQSLKKDYETLANISNIAMARQNLSVYSKAETDVRYAFKAGAAGQVFAVAPATAGSHAVPRDQLPALYPRAGAAPGIIALASQAEGYAGTVENKAIAPSVLKALTLYKSQNLADLPDKQLARANLGLASSAVLPEXTWXKXXXNLADXPNKXXARXNLGLTDTATLPVGDVMRKSENLAGLTNVPQARANLGLGTMATANSGDFLTSANNLGDVRDAQAARNNLGLKGCATLDALGLPTGATGLDFQSEQSSSASGWAALPNGLILQWGQGPALYDDRSTIVRLPRQARILNVSVTVMGTFNASIGPGAYMTDQWSNTQFRVSCNWGNWAYPFCWFAITTIYGM
Physico‐chemical
properties
protein length:464 AA
molecular weight: 48554,22670 Da
isoelectric point:8,76204
aromaticity:0,08352
hydropathy:-0,21033

Domains

Domains [InterPro]
DC_0104
STR
1–462
DC_0104
Coil
Unmapped
114–134
Coil G3DSA:2.60.40.3940
WAB57810.1
1 464
Architecture
STR
STR 1-462 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_RP11
[NCBI] 		2951333 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAB57810.1 [NCBI]
Genbank nucleotide accession
ON524867.1 [NCBI]
CDS location
range 47092 -> 48486
strand +
CDS
ATGCCGCTTCCAAAACCTGACGACCTGTCCGTAATCTGGGCATCTATTGGGCAGGCGACTAAGCCTGCTCCAAACAAGATCATGACAGGCTGGACCAACGAAATCCCTCCCTACCAATGGCACAACTGGTATTTCCAGAGGGTAGATAAGGCCCTGGCCCACATCAACCAACAAGGCATCGCCATGTGGGATGCCGCCACCACTTACGAAGGGGGTACCAGCCTGGCCAAAGGGTCAGATGGGGTGGTGTACAAGGCCAAACGGTCCAGCCGAGGTGTTGACCCCGTATCTCCGGCAAGCAACCTGGACTGGGAACCCGCATTCGAGAGGTACGGTGAGGCTGCGAAAGTAAATTCCCAGCTTCAATCCTTGAAAAAGGATTATGAAACACTGGCCAATATCAGCAACATTGCCATGGCCAGGCAAAACCTCTCGGTATATTCCAAAGCCGAGACAGATGTCCGATACGCCTTCAAGGCTGGGGCAGCCGGGCAGGTGTTTGCTGTAGCCCCTGCCACAGCAGGAAGCCATGCAGTCCCAAGGGATCAGTTGCCAGCCTTGTACCCCCGAGCTGGAGCAGCACCAGGCATCATCGCTTTGGCAAGCCAGGCGGAAGGATACGCAGGCACCGTTGAGAACAAGGCGATTGCACCGAGTGTCCTGAAAGCACTCACCCTGTATAAGAGCCAGAATCTGGCGGACCTCCCGGATAAGCAGCTTGCCCGGGCGAACCTGGGGCTGGCCAGTTCTGCTGTGCTGCCKGAGARCACCTGGYTSAAGMSTRMTRRCAACCTGGCKGATRTYCCCAACAARSCCRCAGCMCGGKCTAACCTGGGGCTCACAGACACTGCTACACTGCCTGTAGGCGACGTAATGCGCAAGAGTGAGAACCTGGCAGGGTTGACCAACGTCCCTCAAGCACGGGCTAACCTGGGTTTGGGAACTATGGCAACTGCCAACTCGGGAGACTTCCTAACCTCGGCGAACAACCTTGGAGATGTCAGGGATGCACAAGCAGCCCGGAACAACCTGGGCTTGAAAGGATGTGCTACCTTGGATGCCCTGGGGCTTCCCACAGGAGCCACAGGCCTGGACTTCCAATCGGAACAGTCCTCCAGCGCATCCGGCTGGGCAGCTCTTCCGAACGGGTTGATCCTTCAGTGGGGTCAAGGCCCTGCACTGTACGATGATCGGTCTACGATTGTCCGGCTGCCACGCCAGGCTCGAATCCTGAACGTGAGCGTAACTGTGATGGGCACTTTCAACGCCTCTATCGGGCCAGGCGCCTACATGACGGACCAGTGGAGTAATACTCAGTTCCGGGTATCGTGCAACTGGGGCAACTGGGCGTATCCGTTCTGCTGGTTCGCTATCACCACCATCTACGGGATGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
eccf7d128430883d7d4c029823e9f74c761ec8b522709c9a2cba8f89623d78e4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7631
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The phenotypic and genotypic characterization of efficient bacteriophages that are isolated in our laboratory against Pseudomonas Aeruginosa strains isolated from diabetic foot infections Salih,H., Bozdogan,B. and Basbulbul,G. 2011-12-28 — GenBank