Protein

View in Explore
Genbank accession
QWY83142.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTTPYDTIKAAVLGNPIDPNKEPDRVGVVQAFQEMQVQMDAAQSGALVFGTLAQLTAITVVPSSNIMAWVVNDPTTANNGIYRNTGTALAAVWTRQTDIPQYVIAGINVGAGTVNAIQVTTDLPVPVADGRTILIVPILGANTISPPTVSINGGAALPIVTAAGNNVAIGGLIAGMNVAGVLTNSGTKFRLLSDQASAAIQAAAEAAQAAAEAAASSVNIRNVADRTALKALNTSVSTLAFLKEGSREGFFEWQTGDFSTHIATDTLEGVYIKANDSAATVGAWVRRFTGPVNVEWFGATGDGVTDNTTAFQCAFNVARYASGEWSFIPRGDWIINGGKFTWDTTRTGVRIDGVSMGDTDDGTVIRVTGTPTKVVCTRENWVAAYDSGATFDMVDYSASTDDPIAWLFKFGGYYCQVNNIAIYNVWGADGPNPPTDWGYDYDTAIMPQGRYFNMKNVRIVGAWRRAGLLEDWTQWSLSTDMLYLEGCHIEGRWGYESMGPKSSTDLHANDKRGVGGNSDMFAIQTRFFSIRRNYTPAGGFIRYPAPLVGGVDHAGAMKRSGRAPNTGGRGQGHRFVDCRFHSTSRFITLLDFDSRSEFFGCHWEGQAGFKSDGVTPLDTSNTSGSDFRVELTANSLRTRGFGGEISGIWFQDNQPHLLGLFGGSTYNGGGSIWYGTEMNQRSAETIISVSGGSWTPTFFGTTVAGTPTGTFKGRFIREGNKMTCWLEATLTSKGGATGAVRVDGLPLNAYDIIGDVAIGGIHGVTVPAGYSCVGAIVAVGSNDITFNLNSNTSANGFANLDWSQVADNAVIRLKAEYITEF
Physico‐chemical
properties
protein length:821 AA
molecular weight: 87454,66800 Da
isoelectric point:5,18465
aromaticity:0,10110
hydropathy:-0,08490

Domains

Domains [InterPro]
DC_1788
STR
24–468
DC_1788 DC_1378
IPR011050
STR
290–660
IPR011050
IPR012334
STR
291–694
IPR012334
QWY83142.1
1 821
Architecture
STR
RBD
STR 24-694 | RBD 695-820 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QWY83142.1
1 821
Domain Start End Length (AA) Confidence
N-terminal 1 305 305 0,9935
Central domain 306 677 373 0,9917
C-terminal 678 821 143 0,9920
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-305
Central
306-677
C-terminal
678-821

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_X2_24
[NCBI] 		2836082 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QWY83142.1 [NCBI]
Genbank nucleotide accession
MW960031 [NCBI]
CDS location
range 14864 -> 17329
strand -
CDS
ATGACAACTCCATATGATACCATTAAAGCGGCTGTTCTCGGAAATCCGATTGATCCGAACAAAGAACCGGACAGGGTTGGAGTTGTCCAGGCGTTCCAAGAAATGCAAGTGCAAATGGATGCTGCGCAATCGGGCGCGCTGGTGTTCGGGACGCTTGCGCAACTGACGGCAATAACGGTTGTTCCGTCGTCAAATATCATGGCATGGGTTGTCAATGATCCGACAACCGCGAACAACGGCATTTATCGCAACACCGGAACCGCGCTTGCTGCTGTGTGGACGCGTCAAACGGATATTCCGCAATATGTGATTGCTGGAATTAACGTTGGCGCGGGAACGGTTAATGCGATCCAAGTGACAACAGATTTACCGGTGCCTGTTGCTGACGGGCGAACAATTCTGATCGTTCCTATTCTCGGCGCAAACACAATTTCACCGCCGACTGTTTCGATAAACGGCGGTGCGGCGCTTCCAATTGTTACCGCTGCCGGAAACAATGTTGCGATCGGCGGTTTGATCGCTGGAATGAATGTTGCAGGTGTTCTAACGAACAGCGGAACGAAATTCCGACTGCTGTCCGATCAAGCTAGCGCGGCAATTCAAGCAGCAGCAGAGGCGGCACAAGCAGCAGCAGAGGCGGCTGCTTCTAGCGTTAATATTCGCAACGTTGCCGATCGTACCGCTTTGAAGGCGTTAAACACTTCGGTTTCAACACTCGCATTCTTAAAGGAAGGCAGTAGAGAAGGATTTTTTGAGTGGCAAACTGGTGATTTTTCCACTCATATTGCAACAGACACTTTAGAAGGTGTTTATATTAAAGCAAACGATAGTGCGGCAACGGTTGGCGCATGGGTGCGAAGGTTTACCGGCCCGGTTAACGTCGAATGGTTCGGAGCAACGGGCGACGGTGTTACGGATAATACAACAGCATTTCAATGTGCGTTCAATGTCGCCCGATATGCAAGCGGTGAATGGTCTTTCATACCGCGCGGAGATTGGATTATCAATGGCGGGAAATTCACCTGGGATACTACACGAACCGGCGTCCGAATTGACGGCGTGAGCATGGGTGACACAGACGATGGAACGGTTATTCGCGTCACCGGTACGCCGACAAAAGTTGTTTGCACGCGTGAAAATTGGGTTGCAGCGTACGATAGCGGTGCAACGTTTGATATGGTTGATTATTCGGCGTCCACAGACGATCCGATTGCATGGCTGTTCAAATTTGGCGGTTATTATTGCCAAGTAAATAACATTGCAATTTATAATGTTTGGGGCGCTGACGGTCCTAATCCGCCTACTGATTGGGGATATGATTACGACACTGCGATAATGCCGCAAGGGCGTTACTTCAATATGAAGAATGTTCGCATTGTCGGCGCATGGCGGCGCGCTGGTTTGCTTGAAGATTGGACGCAATGGAGCTTGTCAACTGACATGCTTTATTTGGAAGGTTGCCATATCGAGGGTCGTTGGGGCTATGAAAGCATGGGGCCGAAATCGTCAACCGATTTGCACGCAAATGATAAGCGTGGCGTCGGCGGCAACTCGGATATGTTTGCTATTCAAACCCGGTTCTTTTCTATTCGCCGTAATTACACTCCTGCCGGTGGTTTCATTCGCTATCCCGCGCCGCTTGTTGGCGGTGTTGATCACGCTGGCGCAATGAAACGTAGTGGACGCGCGCCGAACACAGGCGGGCGCGGTCAAGGTCATCGGTTCGTTGATTGCCGTTTCCATTCAACAAGTCGCTTCATTACTTTGCTTGATTTCGATAGTCGCAGCGAATTCTTCGGTTGTCATTGGGAAGGTCAAGCGGGTTTCAAATCAGACGGTGTTACGCCGCTCGATACGTCCAACACGTCCGGTTCAGATTTCCGAGTTGAATTGACGGCTAATTCGTTGCGTACGCGTGGTTTCGGTGGTGAAATTTCCGGCATTTGGTTTCAGGACAATCAGCCGCATTTGCTCGGATTGTTTGGCGGTTCTACTTACAACGGCGGTGGTTCCATTTGGTACGGAACGGAAATGAACCAACGCAGTGCGGAAACGATTATTTCCGTATCGGGCGGTTCTTGGACGCCGACATTTTTTGGAACAACTGTTGCAGGTACACCAACCGGAACGTTTAAAGGGCGCTTTATACGTGAAGGTAATAAAATGACATGTTGGCTTGAAGCAACGTTAACCAGTAAAGGCGGTGCAACCGGTGCTGTTCGAGTAGATGGATTGCCTCTAAATGCGTATGATATTATCGGAGACGTTGCAATTGGTGGCATTCACGGCGTTACTGTACCTGCTGGTTATTCTTGTGTTGGCGCAATTGTTGCGGTCGGATCAAATGATATTACATTTAATTTGAATTCAAACACAAGCGCTAACGGATTTGCCAACCTTGATTGGTCGCAAGTAGCAGACAATGCTGTTATTCGCCTTAAAGCAGAATACATAACCGAATTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a8ee6aeb4c6d974859fec4fd0f455100877f00d9cd923679120d544c82a17748
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2994
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Hidden Diversity and Expansion of Phages in the Symbiotic Bacteria Rhizobium Gonzalez,V., Santamaria,R.I., Bustos,P., Cauwenberghe,J.V. and Juarez,S. 2017-09-25 — GenBank