Protein

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Genbank accession
XLL18673.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MLYPVWDGFDLGADTDMNPEDDRPGDFPISQYPVHMLPLNHLIDNLFVRGSLGVGFGMDGKGLYVSNITVEDCAGSGAYILAHETVFTNIAIIDTNTKNFPANQIYISGACRVNGLRLVGIRSTTEQGLTIDAPNSTVSGITGFVDPSRINVANLMEEGLGNSRINSFNNDSAALRLRIHKLSKTLDSGSVYSHINGGPGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDNAVRDNGAISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:277 AA
molecular weight: 29529,88160 Da
isoelectric point:4,96184
aromaticity:0,06859
hydropathy:-0,03755

Domains

Domains [InterPro]
IPR012332
STR
1–277
IPR012332
IPR011050
STR
2–277
IPR011050
IPR015331
RBD
2–277
IPR015331
XLL18673.1
1 277
Architecture
STR
STR 1-277
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLL18673.1
1 277
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0035
Central domain 11 199 190 0,9642
C-terminal 200 277 77 0,8334
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-199
C-terminal
200-277

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SMP239
[NCBI] 		3384962 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLL18673.1 [NCBI]
Genbank nucleotide accession
PQ720663.1 [NCBI]
CDS location
range 42640 -> 43473
strand -
CDS
GTGCTATACCCTGTATGGGACGGCTTCGATTTAGGCGCAGATACTGACATGAACCCCGAAGATGACCGCCCAGGGGATTTCCCCATTTCTCAGTACCCGGTACATATGCTCCCATTAAACCATTTGATAGACAATCTATTTGTTAGAGGTTCGCTGGGGGTAGGTTTCGGCATGGATGGGAAAGGTCTGTATGTCTCTAACATAACCGTCGAGGATTGCGCTGGTTCTGGGGCTTATATTCTTGCCCACGAAACAGTATTCACTAATATCGCAATAATCGACACCAATACTAAAAACTTCCCCGCGAACCAGATATATATCTCAGGGGCCTGCCGTGTAAACGGCCTTCGTTTGGTCGGCATCCGTTCAACTACCGAACAGGGTCTTACGATAGACGCGCCTAACTCCACGGTAAGTGGGATAACCGGCTTCGTAGACCCCTCAAGGATTAACGTAGCCAATTTGATGGAGGAAGGTCTTGGTAACTCTCGCATAAACAGTTTCAATAATGATTCTGCGGCGCTGCGGTTACGGATACATAAACTGTCAAAAACTCTTGATAGCGGTTCTGTGTACTCCCACATTAACGGCGGGCCAGGTTCTGGTTCAGCATGGACCGAAATTACCGCTATTGCGGGGTCCTTGCCTGATGCCGTGTCATTAAAAATAAACAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGGTGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGGCTATATCACTGTATCTGGAAGGCGATAGCCTTAAGGCGTTAGTTAAGCGGGCCGATGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
75f58cfd4e58f5c67a868008be3212503b383886986ca4ff5e8930485db0de6b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6267
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50