Protein

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Genbank accession
YP_009208183.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MALYPIKSLGAVGVIADQAPTDLAPNAFTNAINARFVEQRVFKTGGNAPLSYVDEDKDLTPLSFVSMPFDYYSAGNSFLVVGTDKKLYKLTDESLTDISRKVATVTKKASASIKIYPVVSQIVPKESTISMNFNQTKNLEVSLLPADANNTDLVWEVSNSTYGSITVDPDDSKLATLTSFEREGNLVVTISTADDSVVAQIAVNIIDGDSGIFLSQDTVTIRKGGTTTLTAVTGKTPVTWSSSNASIVSVTPNANSLTAVIAANGEGNVTITADNGTKTASCEVVSIPQIDSITLSQSDVIVSRGSQYILTATLSPANAPNQNITWTSSNPNIATVSGTSTQGTINALLAGFTEITATTEEGNRVAVCTVRVDLAGRTMRTSAMAFAAPVSEPIGSQEEEVVTPPESEETVYFAEPTSGIDTSGMYEGNSFYDYSNVNDIEGFARASLFATPLSSVTLDVVSASLDVGEEIVITATASPEGEYSYQWSVDKTGYVSTTSVTGKSIKLVALRKGEVNVTCTVSQMTQKDYDAFDDYPWYHAVISNCAVATTHYETPQVKEFESEYFVDLPGWGEQTVVDNDGNPSVKKFNWKCERVRSFNNRLFALNMREANASGVTTNYPLRLRWSNFANENKAPTLWDDFAYDRVVSSDLASNIVGQTQALENGYAGYIDLADSNGSLIDILPLKDYLFVYTEFETYIGSPTNNTYQPLMFKKLFNDSGILAPECVVEVEGSHFVVTQNDVILHNGATKKSIASNRVKNMLINEVCLVNPLATRVHLHQDKKEVWVLYVGPGEPKESFACTKAAVWNYEFDTWSFRTIPYAQCIGLVDPPVLERGPIWSDFQEITWDDPSIKELVWRKDATNFRQRVTIVGSFLRGFYQVDVGALDYFYDRLNDVVIEKPLEMRLERTGLDFDNVTNEWNQKHINRFRPQTTGSGTYTFEAGGSQFSNEYGHPHTSKTYTIGVDRHVSVRLNHPYLFYNVIDNDVNSNAAINGLTIEFAVGGRR
Physico‐chemical
properties
protein length:1005 AA
molecular weight: 110196,60660 Da
isoelectric point:4,70697
aromaticity:0,09652
hydropathy:-0,20279

Domains

Domains [InterPro]
DC_0191
STR
12–1005
DC_0191
G3DSA:2.60.40.1080
STR
117–206
G3DSA:2.60.40.1080 G3DSA:2.60.40.1080 G3DSA:2.60.40.1080 G3DSA:2.60.40.1080
IPR003343
STR
118–202
IPR003343 IPR003343 IPR008964 IPR003343
IPR008964
RBD
210–284
IPR008964 IPR003343
IPR003343
STR
214–284
IPR003343 IPR003343
YP_009208183.1
1 1005
Architecture
STR
STR 12-1005
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009208183.1
1 1005
Domain Start End Length (AA) Confidence
N-terminal 1 525 525 0,9691
Central domain 526 724 200 0,1991
C-terminal 725 1005 280 0,4746
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-525
Central
526-724
C-terminal
725-1005

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage 172-1
[NCBI] 		1598146 Uroviricota > Caudoviricetes > Mktvariviridae > Kuravirus > Kuravirus kv1721
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009208183.1 [NCBI]
Genbank nucleotide accession
NC_028903.1 [NCBI]
CDS location
range 25838 -> 28855
strand +
CDS
ATGGCGCTGTATCCAATAAAGTCACTAGGTGCTGTAGGCGTTATCGCTGATCAAGCTCCGACAGACTTAGCTCCTAATGCTTTCACTAATGCTATAAATGCTCGATTTGTTGAGCAGAGAGTATTTAAGACGGGGGGCAATGCCCCTCTTTCTTATGTAGACGAAGATAAGGACTTAACCCCTCTGTCTTTCGTGTCTATGCCTTTCGATTATTATAGCGCAGGTAATAGCTTTCTTGTTGTAGGTACGGATAAGAAGTTATATAAACTGACAGATGAAAGCTTGACTGACATTAGCCGTAAGGTTGCTACAGTCACTAAAAAGGCTTCTGCCTCAATTAAGATTTATCCAGTTGTTTCTCAAATCGTTCCTAAAGAATCAACCATCTCAATGAACTTCAATCAGACTAAGAATCTAGAAGTTTCTCTTCTTCCTGCTGATGCTAACAATACCGATCTTGTTTGGGAGGTTAGTAATTCAACCTATGGGAGTATTACAGTAGACCCTGATGATTCTAAACTTGCTACTCTAACATCTTTTGAGAGAGAGGGTAATCTTGTAGTAACCATCTCTACTGCTGATGATTCTGTAGTGGCTCAGATTGCTGTGAACATTATAGATGGTGATTCAGGCATCTTCTTGAGTCAAGATACTGTTACTATCCGTAAAGGAGGGACTACCACTCTTACGGCTGTTACTGGTAAAACCCCTGTAACTTGGTCCAGCAGCAATGCTTCTATTGTATCCGTAACCCCTAACGCTAATTCCCTAACTGCTGTTATTGCTGCTAATGGTGAGGGCAATGTAACAATCACTGCTGATAATGGAACGAAGACTGCTTCTTGTGAGGTTGTTTCCATTCCTCAGATTGACAGTATCACTTTAAGCCAGTCAGATGTGATAGTTAGTAGAGGTTCTCAATACATCTTAACTGCTACCCTTTCTCCTGCTAACGCCCCTAATCAAAACATTACTTGGACTTCTTCTAATCCAAATATTGCAACAGTATCAGGGACCAGCACACAAGGGACGATCAATGCTTTACTTGCAGGCTTTACTGAGATTACGGCTACCACTGAAGAAGGTAACAGGGTTGCTGTCTGTACTGTACGTGTAGATTTAGCTGGTAGGACAATGAGAACAAGTGCTATGGCATTTGCTGCTCCTGTATCAGAGCCAATTGGATCACAAGAGGAAGAAGTAGTAACTCCACCTGAAAGTGAAGAGACGGTTTATTTTGCTGAGCCTACGTCTGGTATTGACACATCTGGTATGTACGAAGGTAACAGCTTCTACGACTATTCTAACGTAAACGATATTGAAGGTTTTGCAAGAGCTTCTTTGTTCGCAACTCCTTTGTCATCCGTAACCTTAGATGTTGTCAGCGCTTCTCTCGATGTTGGTGAAGAGATTGTTATCACAGCTACAGCTTCTCCAGAAGGTGAGTATTCCTATCAGTGGTCTGTTGATAAGACTGGTTATGTTTCTACAACTTCAGTTACTGGTAAATCTATCAAACTGGTTGCTCTTCGTAAAGGAGAGGTTAACGTAACATGTACTGTCAGTCAGATGACTCAGAAGGATTACGATGCTTTTGATGACTATCCTTGGTATCACGCTGTTATCTCTAACTGTGCAGTTGCTACAACCCACTATGAAACTCCTCAGGTAAAAGAATTCGAATCAGAATACTTTGTAGACCTTCCGGGATGGGGTGAGCAAACAGTTGTTGATAACGATGGAAACCCTTCAGTCAAGAAGTTTAACTGGAAATGTGAGAGAGTAAGATCTTTTAACAACCGTCTTTTTGCTCTGAATATGAGAGAGGCTAATGCTTCTGGTGTTACCACTAACTACCCGCTTCGTCTTCGTTGGTCTAACTTTGCCAATGAGAACAAAGCTCCTACACTGTGGGATGACTTTGCCTATGATCGAGTTGTGTCTTCGGACTTAGCTTCTAATATCGTAGGACAGACTCAGGCTTTGGAGAATGGGTATGCTGGTTACATTGACCTAGCGGACTCTAATGGTAGCTTGATTGATATTCTTCCTCTTAAAGATTACTTGTTCGTTTATACAGAGTTTGAAACGTATATTGGTTCTCCGACTAATAACACATACCAACCTCTGATGTTCAAGAAACTCTTTAATGACTCTGGTATCCTTGCTCCTGAGTGTGTGGTTGAAGTAGAAGGTAGCCACTTCGTAGTTACTCAGAACGATGTAATCCTACACAATGGTGCAACCAAGAAGTCAATTGCATCTAACCGTGTTAAGAACATGCTGATTAATGAGGTGTGTCTGGTTAACCCTCTAGCAACTCGAGTACACTTGCATCAGGATAAGAAAGAAGTTTGGGTTCTCTATGTAGGTCCGGGAGAGCCGAAAGAAAGCTTCGCTTGCACTAAAGCTGCTGTATGGAACTACGAGTTTGATACTTGGTCTTTCCGTACTATCCCTTATGCTCAGTGTATCGGTCTGGTTGATCCTCCTGTTCTAGAGAGAGGTCCAATCTGGTCTGACTTCCAAGAGATCACTTGGGATGACCCATCTATCAAAGAACTCGTTTGGAGAAAGGATGCAACAAACTTTAGACAGAGGGTTACGATAGTAGGTTCGTTCTTGAGGGGATTCTACCAAGTGGATGTAGGTGCTCTTGATTATTTCTATGACAGGTTAAATGATGTTGTTATAGAGAAGCCTCTGGAGATGAGGTTGGAGAGAACTGGTCTAGATTTTGATAATGTGACAAATGAGTGGAATCAGAAGCATATTAACAGATTCCGTCCTCAGACAACCGGCTCAGGCACTTATACCTTTGAAGCTGGAGGTAGTCAATTCTCAAATGAATATGGACACCCACACACATCTAAGACTTATACAATCGGTGTTGACAGGCATGTCTCGGTGAGACTGAACCATCCATACCTTTTCTATAATGTTATAGATAATGATGTTAACAGTAATGCTGCTATCAATGGGTTAACGATAGAGTTTGCTGTTGGCGGACGGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
155b603d75673d6f5fb74b7448c54324893c033acc8e77bac5bdc502874368e7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7719
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Completed Genome sequence of Escherichia coli Bacteriophage P172-1 Xu,J., Chen,M. and Zhang,W. 2015-10-26 — GenBank