Protein

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Genbank accession
YP_009600278.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,97
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MLAYSSGTGTEVGDSDGIAWNAKTGLYNVTGYSGGSTQLVFQMYQGASSTPSAQLKFNYRNGGFWYRSSRDGFGFEEDFTQIYTEKYKPTPSAIGAYTKAETDQKIAEAISDSTDLNKIYPVGIVTWFNSNVNPNTALPGLTWTYLNNGVGRTIRVAAANGSDVATTGGSDSVTLAVGNLPSHTHSFSATTSSFDYGTKTTNTTGAHTHSVSGSTNNTGAHTHTVGGRYGGDSIGGKHRVQVSGTEQVSSYDGAHSHTVSGTAASNGNHAHTVGIGAHSHTVSGNTGGTGSGSAFSVTNQFYKLMAWVRTA
Physico‐chemical
properties
protein length:311 AA
molecular weight: 32421,64380 Da
isoelectric point:6,89300
aromaticity:0,09968
hydropathy:-0,43698

Domains

Domains [InterPro]
DC_0905
STR
4–311
DC_0905
IPR022246
RBD
5–114
IPR022246 IPR005003 IPR005003 IPR005003 IPR005003 IPR005003
IPR051934
Unmapped
17–283
IPR051934
YP_009600278.1
1 311
Architecture
STR
STR 4-311
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009600278.1
1 311
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,1938
Central domain 15 213 200 0,0481
C-terminal 214 311 97 0,9896
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-14
Central
15-213
C-terminal
214-311

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Si3
[NCBI] 		1965374 Uroviricota > Caudoviricetes > Andersonviridae > Felixounavirus > Felixounavirus Si3
Host Salmonella enterica subsp. enterica serovar Infantis
[NCBI] 		595 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009600278.1 [NCBI]
Genbank nucleotide accession
NC_041922 [NCBI]
CDS location
range 28741 -> 29676
strand +
CDS
ATGCTTGCTTATTCTTCTGGCACTGGTACAGAGGTAGGTGATAGTGATGGCATTGCTTGGAATGCTAAAACTGGTCTGTATAATGTTACAGGTTATAGTGGAGGCTCAACACAGCTTGTTTTCCAAATGTATCAGGGTGCAAGCTCTACTCCCTCTGCTCAATTAAAATTCAACTACAGGAATGGGGGTTTTTGGTATAGGTCATCAAGGGATGGTTTTGGTTTTGAAGAGGACTTCACACAAATTTATACAGAGAAGTATAAACCAACTCCTTCAGCTATTGGTGCATACACTAAAGCAGAGACTGACCAGAAGATTGCAGAAGCGATTAGTGACTCTACAGACCTTAATAAAATCTATCCAGTAGGTATTGTAACGTGGTTTAACAGTAATGTTAACCCTAATACCGCACTTCCTGGATTAACTTGGACGTACCTGAACAATGGTGTAGGTAGGACAATCAGGGTTGCAGCAGCTAATGGTTCAGATGTTGCTACAACTGGAGGCTCAGATTCTGTTACGTTAGCAGTTGGAAACTTACCTTCACACACTCATAGTTTCTCTGCGACAACCTCTAGCTTTGACTACGGTACTAAAACCACTAACACTACTGGTGCTCACACCCACTCAGTGAGTGGTTCTACTAACAACACTGGTGCTCATACACATACAGTTGGTGGTCGTTATGGTGGTGACTCTATCGGTGGTAAACATCGTGTTCAGGTCTCAGGGACTGAACAGGTATCTAGCTATGATGGTGCTCACTCTCACACTGTATCTGGTACTGCTGCCTCTAACGGAAACCATGCTCACACAGTTGGTATTGGTGCTCACAGTCATACAGTTAGTGGTAACACTGGTGGTACAGGTTCTGGTTCAGCATTTAGTGTAACTAACCAGTTCTATAAGCTGATGGCTTGGGTAAGAACTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7c2143e7fdf9d5eb8db6a714d212f788cb5a32dbfaf09e6fa31c56d687042b48
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7776
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition, strain of bacteriophage Escherichia coli, used for obtaining thereof patent RU2518303 Dyatlov,I.A., Aleshkin,V.A., Aleshkin,A.V., Afanas'Ev,S.S., Svetoch,E.A., Volozhantsev,N.V., Vasyliev,D.A., Zolotukhin,S.N., Amerkhanova,A.M., Kiseleva,I.A., Verevkin,V.V., Krasilnikova,V.M., Myakinina,V.P., Bannov,V.A. and Rubalskiy,M.O. 2019-04-29 — GenBank