Protein

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Genbank accession
YP_009791139.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALEKLTQVKGSVSLYLRQLINKTISGTTNYLGYWGLTLSNSGLAGATVKFGGKVWELRSDNADISSSEPSDELWIDCGTDGFTFKSLADAKASLRIEGQGFYISSYHEGLNKGGGWFTWVPSSTAVEDDFLVIGTGSAGRHHRSVENGTVTPSDAGARGEGASSATQDTLAFLKVAACDYNVTCDYTDAGYYLTNQVSLSGTRRNWKIINLNGCDIQFVFDGSSSRNCFQMGDFSEIYGGTLLNNTDPSNSNGDGSFDNPVAVGTTANVAAKNVKIHTLEIYQNLEKTCIGIWGASHDIEVDNIFLRSSERAIIGVLAHWGVDTGDFTTASVSLHPYNLKMSNVTCKNFSGLAANSFAIFLSGVYNVTVDNLTAENMIGGCKVQPGTVGNSLASAEVREKILTNIRVNNINTFNVQQPAFADWSGDGVAWSGGSYDIESDIEFDGVNANESPTGGTAFIVQRLSNVTAKNLRIKNFFRAFHVLGIDGDEASDVTIDDLKAEDIKTIGGYVSGVYCKRFKLTSSEIKDCSDGISTIANESSCLLIESPDFTIENTRLGADSSEDAYRLLALTATATGGLVKGSEYKDVRSGGYHLFNDVPVTTQINTTTPDGFNMLSSNVVLSRLDYVDVGLNLSSNQSVSTGVSSTLNLDSVDHDYYSNYSSLGFLPKTSSMYTVEGLITLRDVLGEGTVNVDVYSGSTRIKRLVSESVNLDSSRNAGVKLSGSFKAEAGSVITLKLTQDIAASLELDSDNNTGTWVDFRQL
Physico‐chemical
properties
protein length:763 AA
molecular weight: 81830,68640 Da
isoelectric point:4,71334
aromaticity:0,08781
hydropathy:-0,16147

Domains

Domains [InterPro]
DC_1719
ATT
1–85
DC_1719 IPR059934 IPR011050 DC_1579
YP_009791139.1
1 763
Architecture
ATT
RBD
STR
RBD
ATT 1-85 | RBD 86-145 | STR 422-560 | RBD 561-763
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009791139.1
1 763
Domain Start End Length (AA) Confidence
N-terminal 1 167 167 0,9847
Central domain 168 619 453 0,9874
C-terminal 620 763 143 0,9838
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-167
Central
168-619
C-terminal
620-763

Taxonomy

  Name Taxonomy ID Lineage
Phage Marinomonas phage CB5A
[NCBI] 		2022859 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Murciavirus
Host Marinomonas sp.
[NCBI] 		1904862 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Oceanospirillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009791139.1 [NCBI]
Genbank nucleotide accession
NC_047836 [NCBI]
CDS location
range 42090 -> 44381
strand +
CDS
TTGGCACTAGAAAAACTAACACAAGTTAAAGGTAGCGTCTCATTATACCTTAGACAGCTTATTAATAAAACTATCTCTGGGACAACTAATTACCTTGGTTACTGGGGACTGACACTATCTAATTCAGGTCTAGCTGGAGCAACCGTTAAGTTCGGCGGTAAGGTCTGGGAGCTAAGATCAGATAATGCAGACATCAGCTCATCTGAACCGAGTGATGAATTATGGATAGACTGCGGAACTGACGGGTTTACGTTCAAGTCGCTTGCAGATGCTAAAGCTTCTCTTAGAATAGAAGGTCAGGGATTCTATATAAGCTCTTATCATGAAGGCTTAAACAAGGGTGGTGGCTGGTTCACTTGGGTGCCATCTTCAACAGCGGTCGAGGATGACTTTCTTGTTATCGGCACTGGCTCCGCAGGCAGGCACCACAGATCAGTTGAAAACGGGACAGTTACGCCGTCAGATGCAGGAGCAAGAGGGGAGGGGGCATCATCAGCTACGCAAGATACGCTCGCATTCTTAAAAGTCGCAGCATGTGACTACAATGTTACTTGTGACTATACAGATGCAGGGTACTACTTGACAAATCAAGTGTCGTTGAGTGGAACAAGACGAAATTGGAAAATAATCAATCTTAACGGGTGCGATATTCAGTTCGTGTTCGATGGGTCGTCCTCACGAAACTGTTTCCAAATGGGAGACTTCTCTGAAATATATGGAGGGACGCTCCTAAACAATACCGATCCTAGTAACTCAAATGGGGATGGCAGCTTTGATAATCCTGTGGCTGTAGGCACGACAGCTAATGTAGCAGCTAAAAACGTCAAGATTCATACACTAGAGATCTATCAGAATCTAGAGAAGACCTGCATAGGTATATGGGGAGCGTCACATGATATAGAGGTTGACAACATCTTCCTACGCAGCAGCGAAAGAGCCATTATAGGGGTCTTAGCTCATTGGGGGGTAGATACGGGCGATTTCACGACAGCTTCGGTTTCTTTGCATCCGTACAATTTGAAGATGAGTAATGTTACATGTAAAAACTTTTCGGGTCTAGCTGCGAACAGCTTCGCCATATTCCTCAGTGGAGTTTACAACGTAACTGTAGACAACTTGACAGCAGAGAATATGATAGGAGGCTGCAAAGTGCAGCCAGGGACTGTGGGTAATTCGTTAGCTTCGGCAGAGGTTCGAGAGAAAATTCTAACTAATATCCGAGTTAACAACATTAATACATTCAATGTACAACAACCAGCGTTTGCAGATTGGTCAGGCGATGGGGTTGCTTGGAGCGGGGGTTCTTATGATATCGAATCAGACATTGAATTTGATGGGGTAAATGCTAATGAAAGTCCTACAGGTGGGACAGCTTTTATAGTGCAGCGTCTTTCTAATGTCACAGCAAAGAACTTGAGAATCAAGAACTTTTTCAGAGCGTTTCATGTCTTGGGTATAGATGGGGACGAGGCATCAGACGTAACAATTGACGACTTGAAAGCAGAGGATATTAAAACTATCGGTGGTTATGTATCTGGCGTTTATTGCAAGAGATTTAAGCTAACAAGCTCTGAAATTAAAGACTGTTCAGACGGAATTAGCACTATAGCGAATGAGTCTAGCTGTCTGCTGATAGAGAGTCCTGATTTTACTATAGAGAATACTAGACTAGGAGCTGATTCGAGCGAGGATGCTTATCGACTACTAGCTCTTACTGCGACAGCGACAGGTGGTTTAGTTAAAGGCTCTGAGTATAAAGACGTAAGGAGTGGGGGCTATCATCTATTCAATGATGTTCCGGTCACTACTCAAATAAATACTACAACCCCTGACGGTTTCAACATGCTATCTTCTAATGTAGTTCTAAGTAGATTGGATTACGTAGATGTTGGATTAAACCTCTCTAGTAATCAGTCTGTCTCGACCGGTGTATCTAGTACTCTGAACCTAGATAGTGTTGATCATGACTACTACAGTAACTACAGTTCGCTTGGGTTCCTTCCAAAAACAAGCTCTATGTATACGGTTGAAGGGCTAATAACGCTACGGGATGTATTAGGTGAAGGTACTGTGAACGTTGATGTTTACTCGGGATCTACGCGTATTAAAAGACTAGTATCAGAGAGCGTAAACCTCGACAGTTCAAGGAACGCTGGTGTGAAGCTTAGTGGGTCTTTTAAAGCGGAAGCTGGTTCAGTAATTACACTGAAACTAACTCAGGACATAGCCGCATCACTGGAGCTTGATTCAGACAACAACACAGGTACATGGGTAGATTTCAGGCAACTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ad44fc1b94c50ad9eb655410e2736acbe670fa69108368768fdb15bb4ec6d67c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8120
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of the Marinomonas phage CB5A Lucas-Elio,P., Aroca-Crevillen,A., Garcia-Guillen,I.M., Silas,S., Fire,A.Z. and Sanchez-Amat,A. 2012-09-27 — GenBank