Protein

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Genbank accession
UPT53234.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,69
Protein sequence
MPRNNTGNPLPSSSPLDREDNSLILEELINAKDKDSVPDRFGLPLRTWHKIQKGIEEQLIAGGQIFPDEPTGRAAVSDGQYFYAESNDPGVSKTLWQRLSSSESRFVADEPSIQALAEIFAQILTVDSIGTKLQAVTSGGDVLFEYDGDTGLLRSSRLGVESGHLASAEIDGYSYVIQNSAGEFLFALRDDGTAVLPNVDVVGDLTLSGELITGTSTADYETPHVSQTAIDLINAQTVTQGDGTPRPTSDGTPRLSVDVNAYGFRYAQLASSVVWTGDRVWVCAYGQNTRPGEQGEGQDGFTFLMYCDNYFSDNPKWREVLYFIPAQFGVAENAVFDPMISLLPDGRLLVQAMGEGRNCYGFLVQNPSATRGVFSLSRIYWLGYGVPARPKIAGNKLLAAYDNWITKETVIRELTPMGVDAIHASDFVSIPLLTDINDWNFPETAFDLINGGRIIAIQRTANVHHVTISEPGGETWTQAPEPWTEYPSNSTRCTQDRSPTGRLVRIWNNHPSARNFLTIGLSEDDGASFPWIYTLQETQLDPVRGPTYPSVDFRQSGGKTLITVSYDLGRTQAQNGEIIVATVAEQDIISGAASAETTRYITASTVEQI
Physico‐chemical
properties
protein length:609 AA
molecular weight: 66580,19370 Da
isoelectric point:4,54942
aromaticity:0,09195
hydropathy:-0,27816

Domains

Domains [InterPro]
DC_1559
ATT
1–152
DC_1559 IPR036278
IPR036278
STR
277–570
IPR036278
G3DSA:2.120.10.10
STR
433–542
G3DSA:2.120.10.10
cd15482
ENZ
439–537
cd15482
IPR011040
ENZ
451–551
IPR011040
UPT53234.1
1 609
Architecture
ATT
STR
ATT 1-152 | STR 265-570 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPT53234.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 247 247 0,9701
Central domain 248 446 200 0,6181
C-terminal 447 609 162 0,8591
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-247
Central
248-446
C-terminal
447-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Yong-L1-251
[NCBI] 		2928844 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. PCC 7002
[NCBI] 		32049 Cyanobacteriota > Cyanophyceae > Chroococcales > Geminocystaceae > Picosynechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPT53234.1 [NCBI]
Genbank nucleotide accession
OM868080 [NCBI]
CDS location
range 9824 -> 11653
strand +
CDS
ATGCCGCGCAACAACACTGGCAACCCGCTGCCGAGCAGCAGCCCGCTAGACCGTGAAGACAATAGCCTGATTTTAGAAGAGCTGATCAACGCAAAAGACAAAGACTCTGTGCCAGACCGGTTCGGATTGCCATTGCGCACATGGCACAAAATTCAGAAAGGCATTGAAGAGCAACTGATTGCCGGGGGTCAGATTTTTCCTGACGAACCAACTGGACGGGCGGCGGTATCAGACGGGCAGTATTTTTATGCTGAGAGCAATGACCCCGGCGTTAGCAAAACGCTGTGGCAGCGGTTGTCATCTAGTGAGAGCCGTTTTGTTGCTGATGAGCCTAGTATTCAGGCACTTGCTGAGATATTCGCGCAAATACTCACCGTTGATTCAATCGGCACAAAATTGCAGGCAGTTACCAGCGGGGGCGATGTTTTGTTTGAGTATGACGGCGATACCGGATTGCTAAGATCTAGCCGACTAGGTGTTGAGTCCGGGCATCTAGCGAGTGCTGAAATTGACGGGTACTCGTACGTCATACAAAACAGCGCGGGCGAGTTCTTGTTTGCATTGCGAGACGACGGCACCGCTGTATTGCCTAACGTTGATGTTGTCGGCGACCTAACGCTGTCCGGCGAGCTGATAACGGGAACATCGACGGCTGACTATGAGACGCCGCACGTCAGTCAAACCGCAATTGATCTAATTAACGCGCAAACAGTAACCCAGGGGGACGGCACGCCACGCCCGACGAGTGACGGTACGCCGCGACTGAGTGTTGATGTTAACGCCTATGGTTTTCGTTATGCGCAGCTAGCGTCATCAGTAGTGTGGACGGGTGATCGCGTATGGGTGTGTGCGTACGGGCAAAACACGCGCCCCGGCGAGCAGGGCGAAGGGCAAGACGGATTTACGTTTCTGATGTACTGCGATAATTATTTTAGCGATAACCCCAAGTGGCGCGAAGTGCTGTACTTTATACCCGCTCAATTTGGAGTCGCTGAAAATGCCGTTTTTGATCCGATGATCAGCCTGTTGCCCGATGGGCGGCTGCTCGTGCAGGCGATGGGCGAGGGGCGTAACTGCTATGGATTTTTAGTGCAAAACCCATCCGCCACGCGCGGCGTTTTTAGTCTTAGCAGGATTTACTGGCTGGGCTACGGCGTGCCAGCGCGGCCAAAAATTGCGGGCAATAAATTGCTGGCGGCATACGATAACTGGATCACAAAAGAGACGGTTATACGGGAGCTAACACCGATGGGCGTTGATGCTATCCATGCGTCTGATTTTGTCAGCATTCCGCTACTGACTGATATTAACGACTGGAATTTTCCCGAAACGGCTTTTGATTTAATCAACGGCGGGCGAATAATTGCAATCCAGCGCACGGCTAATGTGCATCACGTCACGATCAGTGAGCCAGGGGGTGAGACATGGACGCAGGCACCTGAGCCGTGGACTGAATATCCATCAAATTCAACGCGATGCACTCAAGACCGTAGCCCGACAGGGCGGCTCGTAAGAATCTGGAACAATCACCCCAGCGCTCGAAATTTCCTGACTATTGGGCTATCTGAGGATGATGGCGCGTCATTCCCGTGGATTTACACGCTGCAAGAAACGCAGCTAGACCCCGTTCGCGGCCCGACTTATCCGAGTGTTGATTTTCGGCAATCTGGCGGCAAAACACTGATTACAGTGAGCTACGATCTTGGGCGAACGCAGGCTCAGAACGGCGAGATTATTGTTGCAACGGTAGCAGAGCAGGACATTATTAGCGGCGCTGCGAGCGCTGAAACTACACGATACATCACAGCGTCAACAGTGGAGCAAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
daedd5df0f77e8bb7522c12bc8e16af07d0da5161cf6cb13ffab2c9fbefd16e9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7121
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Synechococcus cyanophage Yong-L1-251 Pan,L., Li,D., Lin,W., Qu,C., Cai,R., Qian,M., Wang,F., Zhou,Q., Liu,W. and Tong,Y. 2024-11 — GenBank