Protein

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Genbank accession
YP_010670401.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MTAGKLASVRPGATTNTTLYQCPIDRATSAIVDVVNAAGTAGTYRLAVRDYNQIATLNGSSYDFRKGNVVSDYKIQIEPAITDSEFNPGETLSSADGKVSCKYQDIFKPTERIDIPVKVQSVGNLAIDTGTYAGGDGAFDLEDTLTGATTGLQATFYGSEQDAVVVNLPAVATGDTSVIVNTVGTIAVNDLIAFNAEVAEITAIATNTLTITRAQLGTTAVAADPGTSFTALSPDAVTTTINEGATFAAGDDTLTVTDSTGFLVSDVIRIGNEFLTITGLAGNDLTVARGNYGTTDAAHVDGSTVTRMEQVANGFINVFADGETIGNGVVTVSVGTIASYSQMNHFIYERSAIGADPGYTLPGTFVGNLDRVYRFIQEDASNAGHPLKFSTTPDGVHATPTPGTEYTTGVTIAGTPGSVGAYTEINLSYDNVAALDPNFLYIYCENHSGMGVTFEVLLTPFYNEIYVYDVVGEFTLTEGIADATNAYTVNGITPGPYGYILEDRSGSTVKVAAGTGSIAINDQVQTTITGAADSNDITVGSNTGLVVGMHVSGTGIDYDARITEINGTTITLSQPNSGAVSGNGDFNWQFQDSPTEAAAERSIATVLTNADIADADYIAYDAAIAANTTTRVSSTVVGPGQSVMGYSSSGSINFVLNGFEDSTADFTPVLYVRERSA
Physico‐chemical
properties
protein length:677 AA
molecular weight: 70367,52120 Da
isoelectric point:4,11022
aromaticity:0,08124
hydropathy:0,02053

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010670401.1
1 677
Domain Start End Length (AA) Confidence
N-terminal 1 33 33 0,7218
Central domain 34 238 206 0,6179
C-terminal 239 677 438 0,4162
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-33
Central
34-238
C-terminal
239-677

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H38
[NCBI] 		2783673 Uroviricota > Caudoviricetes > Pantevenvirales > Yellowseavirus > Yellowseavirus thirtyeight
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010670401.1 [NCBI]
Genbank nucleotide accession
NC_070964 [NCBI]
CDS location
range 52582 -> 54615
strand +
CDS
ATGACAGCAGGAAAACTCGCGTCAGTACGTCCTGGCGCTACTACAAATACAACTTTATATCAATGTCCTATTGATAGGGCAACATCTGCGATTGTTGATGTTGTGAACGCAGCAGGTACTGCAGGAACTTATCGTCTTGCAGTTCGTGATTATAATCAGATTGCTACTCTTAACGGATCGTCTTACGATTTTAGAAAGGGTAATGTTGTCAGTGATTATAAGATTCAAATTGAACCTGCTATCACCGATTCTGAATTCAATCCTGGTGAAACTCTTTCTTCTGCTGATGGTAAAGTAAGTTGTAAGTATCAGGATATTTTCAAACCAACCGAAAGAATTGATATTCCTGTTAAGGTTCAATCAGTTGGCAACCTGGCAATCGATACTGGAACTTATGCAGGTGGCGATGGTGCTTTCGATCTAGAAGATACTCTGACTGGTGCAACAACTGGTCTTCAAGCAACCTTCTACGGTTCTGAGCAAGACGCAGTTGTTGTCAATCTTCCAGCAGTTGCAACTGGAGATACTTCAGTCATTGTTAATACTGTCGGTACGATTGCTGTAAACGACTTAATCGCCTTCAATGCTGAAGTTGCAGAGATTACTGCTATTGCAACTAATACACTAACAATTACCAGAGCACAGTTGGGTACAACTGCTGTTGCTGCTGATCCTGGTACAAGTTTCACAGCACTTTCTCCAGATGCTGTCACTACCACGATTAACGAAGGTGCTACTTTTGCTGCTGGTGATGACACTCTAACTGTTACTGACTCTACTGGTTTCCTGGTTTCTGATGTTATCAGAATTGGTAATGAGTTCCTAACAATTACTGGTCTTGCTGGTAATGATCTTACTGTTGCTCGTGGCAACTATGGTACTACTGATGCAGCACATGTTGATGGTTCTACCGTCACTAGAATGGAGCAAGTAGCAAACGGTTTCATTAACGTCTTTGCTGATGGTGAGACAATCGGTAATGGTGTAGTTACTGTTAGCGTTGGTACGATTGCTTCCTACTCTCAGATGAATCACTTCATCTATGAAAGAAGTGCAATCGGTGCAGATCCTGGATATACTCTTCCTGGTACTTTCGTTGGTAATCTTGACCGTGTTTATAGATTCATTCAAGAAGATGCATCTAATGCTGGTCATCCTCTGAAGTTCAGTACAACTCCAGACGGTGTTCACGCAACTCCTACTCCTGGTACTGAATACACTACTGGTGTTACTATTGCTGGTACTCCTGGTAGTGTTGGTGCATATACTGAGATCAACCTTTCATATGACAACGTTGCTGCTCTAGATCCAAACTTCCTCTATATCTACTGTGAAAACCACAGTGGTATGGGTGTAACTTTTGAAGTTCTATTGACACCCTTCTATAATGAGATCTATGTCTATGATGTTGTTGGTGAATTCACTCTAACTGAGGGTATTGCTGATGCAACTAACGCATATACCGTAAATGGAATTACTCCTGGACCTTATGGTTATATTCTGGAAGATAGGTCTGGTTCTACTGTTAAAGTCGCTGCAGGTACTGGATCTATTGCTATCAATGATCAAGTACAAACAACTATTACTGGTGCTGCTGATAGTAATGACATTACTGTGGGATCCAACACGGGACTAGTTGTTGGTATGCATGTATCTGGAACTGGCATTGATTATGATGCACGAATCACGGAAATCAATGGTACGACAATCACATTGTCTCAACCTAATAGTGGTGCAGTTTCTGGCAACGGCGACTTCAACTGGCAGTTCCAAGATTCACCTACTGAAGCAGCAGCGGAAAGATCTATCGCAACAGTATTGACCAATGCTGATATTGCAGATGCAGATTACATTGCATATGATGCTGCTATTGCTGCAAATACCACCACTAGAGTATCATCAACTGTAGTTGGTCCTGGTCAGAGCGTTATGGGTTATTCTTCCTCTGGAAGCATTAACTTTGTGTTGAATGGTTTTGAAGATTCTACCGCAGACTTCACACCCGTTCTCTATGTAAGAGAGCGTTCTGCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
00e6b6a4fbbb683c634180b2721c2b48fea6904f078da0170fbb19d8b3b53391
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5234
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H38 from the Yellow Sea, China Jiang,T. 2019-04-04 — GenBank