Protein

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Genbank accession
YP_004324641.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,78
Protein sequence
MSRVTLGKLGGISTTLGQVTIPSGHTLNVQGDIFHHNNTGAIKLPAGTDAQRPSSPATGVIRFNTESNLAEVYTGSSWETVVGTGGGGSTNTLGTAANPATHGLQLKAAGLPSGLYFIQPSGQSAYRMYVDNDRNGGGWVLMAHVRTSTCQDHMTNNSVRISGNIGPRFGNTSTTKMADSWINAVRSASTYSGSTRWWLEAHGFGNPVKNMFVASGATADLVSSASNQNDRTRVSTSYEGGLSDRGPNTGTRGLGDHHTSGGTYFAWGRHPESGNNCGFREDSLGASNGYLWMK
Physico‐chemical
properties
protein length:294 AA
molecular weight: 30920,59920 Da
isoelectric point:9,16845
aromaticity:0,07823
hydropathy:-0,46871

Domains

Domains [InterPro]
DC_1111
ATT
3–145
DC_1111 DC_0434
IPR036056
STR
108–146
IPR036056
YP_004324641.1
1 294
Architecture
ATT
STR
ATT 3-145 | STR 146-294
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004324641.1
1 294
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,8057
Central domain 17 215 200 0,0247
C-terminal 216 294 78 0,9917
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-215
C-terminal
216-294

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM5
[NCBI] 		445685 Uroviricota > Caudoviricetes > Pantevenvirales > Glaucusvirus > Glaucusvirus ssm5
Host Synechococcus sp. WH 8102
[NCBI] 		84588 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324641.1 [NCBI]
Genbank nucleotide accession
NC_015289 [NCBI]
CDS location
range 29611 -> 30495
strand +
CDS
ATGAGTAGAGTAACTTTAGGAAAATTAGGTGGCATTTCTACTACTTTAGGACAGGTCACAATTCCGTCTGGACACACTCTAAATGTTCAGGGTGATATTTTTCATCATAATAATACTGGGGCAATTAAGTTGCCAGCAGGTACAGATGCACAAAGACCTAGTAGTCCTGCTACTGGTGTTATCAGATTTAATACCGAATCTAATCTTGCGGAAGTTTATACTGGAAGTTCATGGGAGACAGTTGTTGGAACAGGTGGAGGAGGAAGCACTAATACTTTAGGAACTGCCGCTAATCCTGCAACACATGGATTACAGTTAAAAGCAGCAGGTTTACCATCTGGATTATATTTTATTCAACCATCTGGTCAGTCGGCATATCGAATGTATGTTGATAATGATCGCAATGGTGGTGGATGGGTTTTGATGGCACATGTAAGAACTTCTACATGTCAAGACCATATGACTAACAATTCGGTCAGAATTAGTGGAAACATAGGACCTAGATTTGGAAATACATCAACAACTAAAATGGCGGATAGTTGGATTAATGCTGTTCGTAGTGCTTCAACTTATAGTGGTTCAACACGTTGGTGGTTAGAAGCACATGGTTTTGGTAATCCTGTAAAGAATATGTTCGTCGCTAGTGGTGCTACTGCGGACTTAGTATCATCCGCTAGTAACCAAAATGATAGAACAAGGGTCTCTACTTCATATGAAGGTGGTTTATCCGATAGAGGTCCTAACACAGGAACCAGAGGTTTGGGCGATCACCATACTTCGGGTGGTACCTATTTTGCTTGGGGTAGACACCCTGAGTCAGGAAATAACTGCGGTTTCCGTGAAGATAGTCTAGGTGCATCTAACGGTTACCTTTGGATGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e49160a96f9d00d01768e4aae6c9e88fa2e319fd83841ee75dc4865341650da5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5999
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8102-12 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank