Protein

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Genbank accession
YP_009878325.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSLDNFRNRTIIWDTVNKDFPQPIQIMQGDVNARTLLIKIVDNGVEIDLTGHSLKLAYQYTNSSNSGFVMIPPKDLAKGEFILVIPTEMTTTGVIEANLILLNESLEQVIVSKSLTFISDNSTVTDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTEANLSDIEALQDSIAKIAEAQANSLPLNVKWFGAKGDGVTDDTLSIQRAIDTGFSVFIPPGKYNVKELKGFSSGQIIQGISKAESWGGKNTQNITLLNGIGSADNYVIKNNVWTDGILPTAITVKNLSIEGSKKTNGILVGNSSTIEGVKIANCINGLSNIKVSNVMNCQINGCTNGVMSAVDSKITNNFFYYNEVGINFDNSNDNSIVNNKIEWNRIGISLTKATFNLISNNIIDRNTTYGIYTFNTANTTILGNQFERNLTNHLYLQGSQFNISTNSFFRKNSEDNQSGIMAPDIAIFVKSVSNSMITNNFVNGKMFNKTGTDYSSNVNYSANTIDGINPDNISINIPETTVAHDQDTKIIIPLPSYFDGALNNPYNVEIVSQKMLITTQDGNFYSNGGIIKSIYMSKSGIELTIINHYKDDLKIAGKIKVRCVYPSLY
Physico‐chemical
properties
protein length:602 AA
molecular weight: 66230,00640 Da
isoelectric point:5,13378
aromaticity:0,07807
hydropathy:-0,18189

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
10–125
G3DSA:2.60.40.3350 IPR011050 DC_1144
IPR018913
ATT
13–147
IPR018913 IPR012334
IPR018913
ATT
25–147
IPR018913 IPR012334
IPR006626
Unmapped
280–303
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
284–441
IPR039448
IPR022441
Unmapped
380–422
IPR022441
YP_009878325.1
1 602
Architecture
ATT
STR
RBD
ATT 10-147 | STR 182-523 | RBD 524-602
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009878325.1
1 602
Domain Start End Length (AA) Confidence
N-terminal 1 205 205 0,9940
Central domain 206 507 303 0,9913
C-terminal 508 602 94 0,9867
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-205
Central
206-507
C-terminal
508-602

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 57001
[NCBI] 		2029667 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009878325.1 [NCBI]
Genbank nucleotide accession
NC_049406 [NCBI]
CDS location
range 6873 -> 8681
strand +
CDS
ATGAGTTTAGATAATTTTAGAAATAGAACGATTATATGGGATACGGTTAATAAAGATTTCCCTCAACCAATACAAATAATGCAAGGCGACGTCAATGCAAGAACGTTATTGATTAAAATAGTTGATAATGGAGTTGAAATTGACTTAACTGGTCATTCATTAAAACTTGCATATCAATATACTAATAGTAGTAATTCTGGTTTTGTTATGATTCCTCCTAAGGACTTAGCTAAGGGAGAATTTATTTTGGTAATTCCTACCGAAATGACAACGACTGGAGTTATCGAGGCAAATTTAATTCTTCTCAACGAAAGTTTAGAGCAAGTTATCGTCAGCAAAAGTCTTACATTTATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAAATTGATGATTTCACTAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTAAATGACTTACATGCCCAAACTGAAGCAAATTTGTCTGATATAGAAGCTTTGCAAGATTCAATAGCAAAGATTGCCGAAGCACAAGCAAATAGTTTACCACTTAATGTCAAATGGTTTGGAGCTAAAGGAGACGGGGTAACTGATGACACTTTGTCAATTCAAAGAGCTATTGATACTGGTTTTTCAGTTTTTATACCTCCTGGTAAGTATAATGTAAAAGAATTGAAAGGTTTTTCATCAGGACAAATCATACAAGGAATTAGTAAAGCAGAGTCTTGGGGAGGAAAAAACACACAAAACATAACGCTCCTTAATGGAATAGGTTCTGCAGACAACTATGTGATAAAAAATAATGTTTGGACAGATGGTATTCTCCCCACCGCTATTACCGTAAAGAATTTATCCATAGAAGGTAGTAAAAAAACAAATGGAATACTTGTCGGAAACTCTAGTACAATTGAGGGAGTGAAAATCGCAAATTGTATTAATGGGCTATCTAACATCAAAGTGTCAAATGTTATGAATTGTCAAATTAACGGTTGTACTAACGGGGTAATGAGTGCCGTTGATTCAAAAATAACTAATAACTTTTTTTATTATAATGAAGTCGGTATAAATTTTGATAATTCAAATGATAACAGTATTGTGAATAATAAAATAGAGTGGAATAGAATAGGAATTTCCTTAACGAAAGCTACTTTCAATTTAATTAGTAATAATATTATTGACAGGAATACTACTTATGGAATATATACGTTTAATACGGCTAATACAACTATTTTAGGTAATCAGTTTGAAAGAAATTTAACAAATCATCTCTATCTTCAGGGTTCTCAATTTAATATTTCTACAAATTCTTTCTTTAGAAAAAATTCGGAAGATAACCAATCAGGAATAATGGCTCCTGATATAGCTATCTTTGTTAAGTCTGTGTCAAATTCTATGATAACAAATAATTTTGTTAATGGTAAAATGTTTAACAAGACGGGAACAGATTATAGCTCTAATGTTAACTACTCTGCCAATACGATAGATGGAATAAACCCTGATAACATCTCTATAAATATCCCAGAAACAACTGTCGCTCATGATCAAGATACAAAAATAATTATTCCTCTTCCAAGTTATTTTGACGGTGCATTAAACAATCCATATAATGTCGAAATTGTTTCCCAAAAAATGTTAATTACTACACAAGACGGAAATTTTTACTCTAACGGAGGAATCATAAAGAGCATTTATATGTCCAAAAGTGGTATTGAGTTAACAATTATCAACCATTATAAAGATGATTTGAAAATAGCAGGGAAAATAAAAGTAAGATGTGTATATCCAAGTTTATATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
7d3bfbf9bf33f62a49edd4355aafdad09026eb0b8bd30def5dc15622d4e2d273
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8057
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genome analysis of lactococcal phages belonging to the virulent 936 group Oliveira,J. 2024 — GenBank