Protein

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Genbank accession
ALM62131.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,61
Protein sequence
MLLRNIPSDSWVSVNSLLGIPVGSKLDLVNQGQADLILTTSDTQPLSSFTGGKFLKEVESEQSRTTLRATSKELWVRSNSSTTTGILFVQEDSYPFTDFGGDLDPRVYTGNQGITTQPFTEANVKNGTQFTITEEIVITTGTPIVYRGFKTPNDGRDILVKTRIINTDGGMRYTPHTSQTGVVVGANKDSFIVNLNSKSSNTSGTSYYDITSVASEGPFFDVIRSANGTGSNRQQGIFSGLGIERVLDQDTEYLLKFENLDNKTIYVVFSITFYSGPLSVDII
Physico‐chemical
properties
protein length:283 AA
molecular weight: 30923,07050 Da
isoelectric point:4,83634
aromaticity:0,09187
hydropathy:-0,24311

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALM62131.1
1 283
Domain Start End Length (AA) Confidence
N-terminal 1 278 278 0,3961
Central domain 279 278 1 0,0138
C-terminal 279 283 4 0,9424
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-278
Central
279-278
C-terminal
279-283

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage qdvp001
[NCBI] 		1003177 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALM62131.1 [NCBI]
Genbank nucleotide accession
KT932418 [NCBI]
CDS location
range 72077 -> 72928
strand +
CDS
ATGTTGCTTAGAAACATCCCATCAGATAGTTGGGTTAGTGTCAACAGTTTGCTTGGTATTCCTGTAGGAAGTAAGCTAGACTTGGTAAACCAAGGCCAAGCAGATTTAATTTTAACTACGTCAGATACACAACCCCTAAGTAGTTTTACAGGTGGTAAGTTTCTTAAGGAAGTGGAATCTGAACAAAGCAGGACAACTCTAAGAGCTACCTCAAAAGAGTTGTGGGTCAGAAGTAACAGCTCTACAACCACTGGTATTTTATTTGTACAAGAAGATAGTTACCCTTTCACTGATTTTGGCGGAGACTTAGACCCACGAGTTTACACGGGTAACCAAGGTATTACTACTCAACCGTTCACTGAGGCTAATGTAAAGAATGGCACTCAGTTCACTATCACTGAAGAAATAGTTATCACAACTGGAACACCTATTGTTTATCGTGGTTTCAAAACTCCTAATGATGGTCGTGATATTCTTGTTAAAACTCGCATTATCAATACTGATGGAGGTATGCGTTATACACCCCACACCTCCCAAACTGGTGTTGTAGTTGGTGCTAACAAAGACAGTTTTATTGTAAACTTAAACAGTAAATCTTCTAACACAAGCGGTACCTCTTACTACGATATTACATCTGTTGCTTCCGAAGGTCCCTTCTTTGATGTAATAAGATCTGCCAATGGTACAGGCTCTAATCGGCAGCAGGGTATATTCTCTGGTTTAGGTATTGAACGTGTACTTGATCAGGATACAGAATACTTACTTAAGTTTGAAAATCTAGACAACAAAACTATTTATGTTGTGTTCTCAATCACATTCTACTCTGGACCACTAAGTGTAGATATAATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
996ad46e35f80a8083548062c7e612b2bb37e48517b1c0a3d9707b1d144f5602
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7420
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio parahaemolyticus phage qdvp001 Wang,W., Wang,J. and Lin,H. 2016-07-04 — GenBank