Protein

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Genbank accession
XLY76928.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAEEIKIYGAKGGSQKQHQPVEQEDNLISLNKVKVLLAVADGEVDPNFSLKDLYLADVPVQNQDGSYNYEGVRAEFRAGTQYQDYIAGLDGANSEIQASREITNDTPYIIAVNNTKLSAIRVKLYWPRLVKQESNGDLNGTTCEYAIDLSVNGGAYQEYTRGVANGKTTTGYDRSIRVNLPAEFDSALVRIRKITPDSTSSTLVNGMQITTYQEVIDAKFRYPLTALVYVEFGSDLFPNGIPTISIKKRWKLIQVPTNYDPETRTYNGTWNGLFKMAWSNNPAWVLYDLVTNRRYGLDQRELGVEIDKWGLYEAAQFCDQMVPDGKGGMEPRYLCDMVVQNKVEAYTLIRDICSIFRGLTFYDGEKIGIVVDKPRNPSYIFTNDNVVNGLFSRTFASEKSLYTTANVQFDDVENNYQQDVEPVFELEATRRFGFNPVDLTAIGCTRRSEANRRGRWLLKTNLRSETISFTTGLEGMIPMIGEVIAVNDAAWSSNYQLNLSGRIESVQGLQVFTPFKVDAAPGDRILLNKPDGSPEARTIASVSEDGRTINLNTAFSFVAQPDTVFAIDKDNLALQQYVVTGIQKADTDGQDSFQYTITAVEYDPNKYDEIDYGVNIIDRPTSIVEPDRLSPPENLTVSSYSKVVQGLSVETMVIGWDKAPYAKTYNVQWRKENGNWINVPRTASTEVDIEGIYAGIYQVRVRAVSDTENVSSWSDIVSASLTGKIGTPSAPTVITASDDEVFGIRVKWGFPENSADTSYTELQQVADNGDGTYTPENASLLTLVPYPSYEYWHTTLPAGKVIWYRARLIDKIGNVSPWTDFVRGMASDDVESIIGEIKVDIENSEGFKYLQQNAIEKNSAIQAQAESIIENALANDSDVRRMTKENGKRKAEFVQAVNLIADEEKARVEALTQLKAQIDDEIVASLTRIDTALAEEAQARTTADTALSARLGENEAALNQKLDAFVNAEQTGVQYSVSLGLKYEGRTYGAGMSLELVGSGGNVRSQFIFDANRFAISNGISSGSGQWSLPFVVENNQVFIQSAVIQDGSITNAKIGNSIQSNNYVANSQGWSLNKAGTFENNGFTPGEGKMKQTNQTISVADANGRLRVQIGRLTGTY
Physico‐chemical
properties
protein length:1118 AA
molecular weight: 123735,48290 Da
isoelectric point:4,76046
aromaticity:0,09302
hydropathy:-0,37621

Domains

Domains [InterPro]
DC_0014
STR
1–1118
DC_0014
IPR053171
Unmapped
6–884
IPR053171 Coil IPR015406
IPR055385
ATT
93–218
IPR055385 IPR032876 IPR036116
IPR013783
STR
630–721
IPR013783
IPR003961
STR
630–719
IPR003961
IPR003961
STR
631–725
IPR003961
XLY76928.1
1 1118
Architecture
STR
ATT
STR
ATT
STR
STR 1-92 | ATT 93-218 | STR 219-342 | ATT 343-489 | STR 490-1118
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLY76928.1
1 1118
Domain Start End Length (AA) Confidence
N-terminal 1 509 509 0,9357
Central domain 510 1062 554 0,0422
C-terminal 1063 1118 55 0,7042
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-509
Central
510-1062
C-terminal
1063-1118

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage JNP1
[NCBI] 		3388331 No lineage information
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLY76928.1 [NCBI]
Genbank nucleotide accession
PQ785851.1 [NCBI]
CDS location
range 6067 -> 9423
strand -
CDS
ATGGCTGAAGAAATTAAGATTTATGGTGCCAAAGGCGGTAGCCAGAAGCAGCATCAACCAGTGGAGCAGGAAGATAACCTAATTTCACTTAACAAGGTTAAGGTATTACTTGCGGTTGCTGACGGAGAGGTGGACCCTAACTTCTCATTGAAGGATTTATACCTTGCTGACGTTCCGGTGCAAAATCAGGATGGTAGCTACAACTATGAAGGTGTTCGCGCTGAGTTCCGTGCTGGTACGCAGTATCAGGACTATATCGCCGGTCTTGATGGTGCTAACTCAGAGATTCAGGCCTCCAGAGAAATCACGAACGATACCCCGTACATCATTGCGGTTAACAATACTAAGCTATCAGCGATTCGTGTAAAGCTATATTGGCCTAGGCTGGTTAAGCAAGAAAGTAATGGAGACCTGAACGGAACAACCTGCGAGTATGCGATTGATCTTTCTGTTAATGGTGGCGCTTATCAGGAATATACTCGAGGAGTTGCTAACGGGAAGACAACTACAGGTTACGACCGCAGCATTCGCGTGAACCTTCCGGCTGAATTTGATAGCGCATTGGTTCGCATCAGAAAGATTACGCCAGATTCGACGAGTAGCACATTGGTTAACGGGATGCAGATTACAACCTATCAGGAGGTAATCGACGCTAAATTCCGCTATCCGCTTACAGCTCTGGTTTACGTTGAGTTTGGCTCTGACCTTTTTCCTAACGGTATCCCGACAATATCTATCAAGAAGCGATGGAAGCTGATTCAGGTCCCAACTAACTACGACCCTGAAACCAGAACTTACAACGGGACATGGAATGGCCTATTCAAAATGGCATGGTCAAACAACCCAGCGTGGGTTCTGTATGACTTAGTGACAAACCGCCGCTACGGTCTTGATCAGCGAGAGTTGGGTGTAGAGATTGATAAGTGGGGCCTGTACGAAGCCGCGCAATTCTGCGACCAGATGGTTCCTGATGGTAAGGGTGGAATGGAGCCGCGCTACCTGTGCGACATGGTTGTACAGAATAAAGTTGAGGCTTACACGCTAATTCGTGACATCTGCTCAATCTTCCGTGGCCTGACTTTCTATGACGGCGAAAAGATTGGTATTGTGGTTGATAAGCCACGCAATCCATCATACATCTTCACGAATGATAACGTTGTTAATGGATTGTTCAGCCGCACATTCGCTAGCGAAAAGAGTCTTTACACTACTGCGAACGTACAGTTTGATGATGTAGAGAACAACTATCAGCAGGATGTTGAGCCAGTATTTGAGCTTGAGGCTACTCGCAGGTTCGGGTTTAATCCAGTCGACCTTACGGCAATTGGCTGCACTCGCAGAAGTGAAGCAAACAGACGCGGCAGATGGCTCCTAAAAACCAACCTGAGAAGCGAAACTATCAGCTTCACTACCGGGTTGGAAGGCATGATTCCGATGATTGGCGAGGTTATTGCAGTTAATGATGCGGCATGGTCGAGCAACTATCAGTTGAACCTTTCCGGCCGCATTGAATCAGTGCAGGGGCTACAGGTTTTTACACCGTTTAAAGTTGACGCAGCGCCGGGTGACAGAATTCTTCTTAACAAGCCAGACGGTAGCCCAGAGGCTAGAACTATCGCAAGCGTATCTGAAGATGGTAGAACTATTAACCTGAACACGGCGTTCAGTTTTGTAGCTCAGCCAGATACTGTTTTCGCAATCGACAAGGACAATCTGGCACTTCAGCAATATGTTGTGACTGGTATTCAAAAAGCAGATACTGATGGTCAGGACTCGTTCCAGTACACAATTACTGCTGTTGAGTACGACCCGAACAAATATGACGAGATTGACTACGGCGTTAACATTATAGACCGCCCTACTTCAATTGTAGAACCTGACAGATTGTCGCCACCTGAGAACTTAACAGTATCAAGCTACAGCAAGGTTGTTCAGGGTTTATCGGTTGAGACGATGGTAATAGGGTGGGACAAAGCGCCATACGCTAAAACATACAATGTTCAGTGGAGGAAAGAGAATGGTAACTGGATTAACGTACCCAGAACAGCTAGCACAGAAGTTGATATTGAAGGTATCTATGCAGGTATTTATCAGGTTCGCGTGAGGGCTGTTTCTGACACCGAGAACGTTTCTTCATGGTCTGACATTGTTTCAGCTAGCCTTACAGGTAAGATTGGAACTCCGTCAGCACCTACAGTAATTACAGCTTCAGATGATGAAGTATTTGGCATTAGGGTTAAGTGGGGCTTTCCTGAGAACTCAGCTGATACGTCATACACTGAATTGCAGCAGGTAGCTGACAATGGTGATGGTACTTACACGCCAGAGAACGCCAGCTTGTTAACGCTAGTTCCTTACCCGAGTTACGAGTATTGGCACACTACCCTACCGGCAGGTAAGGTCATCTGGTACAGGGCGAGACTAATCGACAAGATTGGCAACGTCTCTCCGTGGACTGACTTTGTGAGGGGAATGGCAAGTGATGATGTGGAATCTATCATTGGCGAAATAAAGGTTGATATAGAGAACTCTGAGGGGTTCAAGTATCTCCAGCAGAATGCTATAGAAAAGAATTCTGCTATACAGGCGCAAGCTGAATCAATTATTGAGAACGCACTCGCGAATGATAGTGACGTTCGCAGAATGACCAAGGAAAACGGCAAGAGGAAGGCTGAATTTGTTCAGGCAGTGAATCTTATAGCCGATGAAGAAAAGGCTCGTGTAGAGGCTCTTACGCAGCTTAAAGCGCAGATTGATGACGAGATTGTTGCTTCGTTAACAAGGATTGATACTGCGCTAGCGGAAGAAGCTCAAGCTAGGACCACCGCTGACACTGCATTATCAGCAAGGCTTGGTGAGAACGAGGCTGCATTAAACCAGAAGCTTGATGCGTTCGTAAATGCTGAGCAGACTGGGGTTCAGTATTCTGTGAGTCTTGGATTAAAGTATGAAGGAAGAACTTACGGGGCTGGTATGAGTCTTGAGCTTGTTGGTTCTGGTGGGAATGTTCGCAGCCAGTTTATTTTCGACGCGAACAGGTTCGCAATCAGTAACGGAATTAGTTCAGGTTCCGGTCAGTGGTCATTGCCTTTCGTGGTTGAGAATAATCAGGTATTCATTCAAAGCGCAGTAATCCAGGATGGTTCGATTACTAACGCGAAGATTGGAAACTCGATTCAGTCCAACAACTACGTTGCCAACTCGCAGGGCTGGAGTTTAAACAAGGCTGGGACATTCGAGAATAACGGGTTCACACCTGGTGAAGGTAAGATGAAGCAGACGAACCAGACAATTTCTGTCGCGGATGCCAACGGTAGGCTCCGTGTTCAGATTGGACGTTTGACTGGCACCTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7f479b1331a839a0d7f125658c33fbf722b989c65d8956e6241ea61e0a2a2576
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7855
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50