Protein

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Genbank accession
YP_009007183.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MAESTIVQYPSGQSQYDIPFDYLARKFVKVTFVSSTDPSQNRELTLGVDFQFLSERVIELLVEPENQDIVQLRRFTDVELLVDFRDGSVLTSNDLTTSELQAIHIAEEGRDQTYGLAQQFAEEAKDASEDAQVILDEIMAQAKWGYTVVGSFELGVPSPGVTLKNQAVSYGSGDNLAYYIWEGELPKEVPADSSPEITGDIGPGAWVYVGYNINVIQQQLAGDIPFKYESSPRADQGRILNRKAPVVKIATWNVWGAGSGSLYGDLGSRERVRDIQERILHAQVDFCGLQEYYANYRFPATMLQIFPLNTAFHGVVEKYNGATGVTARNFDYGNVALCVDTVISNTSHLYASPGNTSGDKERRGYVRTVANIRGTRIAFYTTHMSYEQPRFTAMFNELIAAVKLDTETHIAVMGDFNTEDEDLFKLFIDEGFVSHNNKEFNTNNTGGTWYIDNIFTKGFGTVINKGTQDSDTKVADHKMFFVELEV
Physico‐chemical
properties
protein length:486 AA
molecular weight: 54287,81370 Da
isoelectric point:4,66554
aromaticity:0,11317
hydropathy:-0,30514

Domains

Domains [InterPro]
DC_0369
STR
1–480
DC_0369
IPR005604
ATT
12–114
IPR005604 Coil G3DSA:2.10.10.80 IPR051547
IPR040775
RBD
159–210
IPR040775 IPR036691
IPR005135
STR
250–465
IPR005135
YP_009007183.1
1 486
Architecture
STR
ATT
STR
ATT
STR
STR 1-11 | ATT 12-114 | STR 115-145 | ATT 146-222 | STR 223-486
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009007183.1
1 486
Domain Start End Length (AA) Confidence
N-terminal 1 251 251 0,9635
Central domain 252 450 200 0,4376
C-terminal 451 486 35 0,3043
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-251
Central
252-450
C-terminal
451-486

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CR44b
[NCBI] 		1455075 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Kayfunavirus
Host Citrobacter rodentium
[NCBI] 		67825 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009007183.1 [NCBI]
Genbank nucleotide accession
NC_023576 [NCBI]
CDS location
range 32462 -> 33922
strand +
CDS
ATGGCTGAAAGTACAATCGTCCAGTATCCATCGGGACAGTCCCAATATGACATTCCGTTCGACTATCTGGCCCGTAAGTTCGTTAAGGTGACTTTCGTCAGCTCTACTGACCCGTCTCAGAACCGGGAGTTGACCTTAGGCGTTGACTTCCAGTTCCTATCAGAGCGAGTAATTGAACTTCTGGTAGAACCTGAAAATCAGGACATCGTTCAGCTTCGTCGTTTTACTGACGTAGAACTTCTGGTAGACTTCCGGGACGGTTCAGTCCTGACCTCCAACGACCTGACTACCTCAGAGCTTCAGGCTATCCACATTGCCGAAGAAGGCCGTGACCAGACTTATGGTCTAGCCCAGCAGTTCGCTGAAGAAGCTAAGGATGCATCAGAGGACGCTCAGGTGATTCTGGACGAGATTATGGCTCAGGCCAAATGGGGGTACACGGTAGTCGGTAGCTTCGAACTCGGAGTTCCCTCACCGGGAGTAACACTGAAGAACCAAGCTGTGTCATACGGCTCAGGCGATAATCTGGCGTACTACATCTGGGAAGGTGAGTTACCCAAGGAAGTACCAGCAGATTCGAGTCCAGAGATTACTGGCGATATCGGACCGGGAGCATGGGTGTACGTTGGCTACAACATCAACGTCATTCAGCAGCAGCTTGCAGGTGACATCCCGTTCAAGTACGAAAGCTCTCCACGCGCAGACCAAGGCCGAATCCTGAACCGTAAGGCACCTGTGGTTAAAATAGCAACGTGGAACGTTTGGGGCGCTGGCTCTGGTAGCCTGTATGGAGACTTAGGGTCACGTGAGCGAGTCCGTGACATTCAGGAGCGCATTCTACATGCACAGGTAGACTTCTGTGGACTTCAGGAGTACTACGCCAACTACCGATTCCCTGCTACCATGCTTCAAATCTTCCCGCTGAACACTGCGTTCCACGGTGTGGTTGAGAAGTATAATGGAGCTACTGGTGTCACGGCGCGTAACTTCGACTACGGTAACGTCGCTCTATGCGTGGACACTGTAATATCTAACACCTCCCATCTCTATGCTAGCCCGGGGAACACGTCAGGTGACAAGGAGCGTCGTGGGTACGTCCGTACAGTGGCAAACATTCGTGGAACCCGTATCGCGTTCTATACAACGCACATGAGCTACGAGCAGCCGCGTTTCACGGCAATGTTCAATGAGCTGATTGCTGCTGTTAAGTTGGACACTGAGACCCACATCGCTGTTATGGGAGACTTCAACACCGAAGATGAAGATCTGTTCAAGCTGTTCATTGACGAAGGCTTCGTGTCTCATAACAATAAAGAGTTCAACACCAATAACACTGGTGGCACTTGGTACATCGACAACATCTTCACCAAGGGCTTCGGTACTGTAATCAACAAGGGAACACAGGACAGTGACACCAAGGTTGCTGACCACAAGATGTTCTTCGTGGAGCTGGAGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
11d1640ffab362089e54746aa12ca1450a1a4c3c0bf7171327a630b4b94f9fb0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8009
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Citrobacter rodentium bacteriophages and their in vivo assessment as antimicrobial agents Toribio,A.L. 2010 — GenBank