Protein

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Genbank accession
ALH23576.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSDYDDKEISQQDGAPYELYEWVGTYRSYFMTTDAIPHVFNSATYNPVSGLKRSTLKAGTHEEDNIDLTITVPITEQLVKDYGFQTTPPALDLTIYRFQRDAATFVPYWKGPVASIIINGEDATLRTPSKFGNILQGNIPNVYVQPPCNNVLFDERCKVSRVSNSLDTVVSAISADGSQISIPSIGGFPNGWFVGGEIAIPARNERRMIIAQTGAILTVNYGFSRISLGTSIQVTAGCDHSFTSANGCPKFNNQINFGGCPYVPGESNNPFTNGIS
Physico‐chemical
properties
protein length:276 AA
molecular weight: 30118,33350 Da
isoelectric point:4,96076
aromaticity:0,10507
hydropathy:-0,22065

Domains

Domains [InterPro]
DC_0733
STR
1–190
DC_0733 IPR018964
PF09931
ATT
31–160
PF09931
ALH23576.1
1 276
Architecture
STR
ATT
STR
RBD
STR 1-30 | ATT 31-160 | STR 161-190 | RBD 191-266 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALH23576.1
1 276
Domain Start End Length (AA) Confidence
N-terminal 1 273 273 0,7360
Central domain 274 273 1 0,0656
C-terminal 274 276 2 0,7854
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-273
Central
274-273
C-terminal
274-276

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PaMx42
[NCBI] 		1175662 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALH23576.1 [NCBI]
Genbank nucleotide accession
JQ067092 [NCBI]
CDS location
range 20717 -> 21547
strand +
CDS
ATGTCCGATTACGACGACAAAGAAATAAGCCAGCAAGACGGCGCACCATACGAACTTTACGAATGGGTCGGAACGTACCGTAGTTATTTTATGACTACGGACGCGATACCGCACGTCTTCAACAGCGCGACGTACAATCCTGTTTCGGGATTGAAACGTAGTACGTTGAAGGCTGGTACGCACGAAGAAGACAATATCGACCTTACGATTACCGTTCCGATTACCGAACAGCTTGTAAAAGATTACGGGTTTCAAACTACGCCGCCCGCTTTGGATTTGACGATTTATCGTTTCCAGCGTGACGCCGCGACGTTCGTTCCGTATTGGAAAGGGCCGGTCGCTTCAATTATTATTAACGGCGAAGACGCTACGTTGCGCACGCCAAGCAAGTTCGGCAACATCTTGCAAGGTAACATTCCGAACGTCTACGTACAACCGCCGTGCAATAACGTTCTGTTCGATGAACGATGCAAAGTAAGCCGCGTTTCTAATTCGCTTGATACGGTCGTATCTGCGATAAGTGCGGACGGATCGCAAATCAGCATCCCGTCGATTGGCGGATTCCCGAACGGATGGTTCGTCGGCGGCGAAATTGCCATTCCGGCACGCAACGAACGTCGAATGATTATCGCACAAACTGGCGCAATTTTGACGGTGAACTATGGGTTTTCGCGCATTTCGTTAGGCACGTCGATTCAAGTTACAGCGGGTTGCGATCATAGTTTCACAAGCGCGAACGGTTGCCCGAAGTTTAACAACCAAATCAATTTCGGCGGATGCCCCTACGTACCCGGCGAATCGAACAACCCATTTACGAACGGAATTAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ea9c02ccac2d47cb02bd488dce2d8e696e7e621017dd108fd13b9dfca6c49582
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8635
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50