Protein

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Genbank accession
WJZ48556.1 [GenBank]
Protein name
collagen
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MAVRRLGLANPLSGTTATVGTATTTSVASVIVTNKGSSTASVTIYVVPSGSSGSETERVYLAANLEVGVGQVFETFRFALQTGDAVLATSNSSNVSYSLTAVYETEGQSNIVYSPTAPGYPAVGDIWIDSDTGAAYFYTPQGFQSLAYVGAGPTGPAGPTGPAGPTGPTGPVGAGVEIRGTFASLELLNLDYPLGNAGDAWLIGTDLYVWSEVDEEYINTGEIVGPQGPTGATGPTGLTGATGPTGPIGPTGPEGGPTGPTGPTGPTGPTGPIGETGPTGADSTVTGPTGPTGPTGPQGQTGLTGVQFQPTAPTGPGVDALWYDTDEVGATAVILPYYKSASGQGTSFIDVRNRADVNGVLSSTSGVVYLTFFTPLESVTVTDITLATATTAAASVTTVRAGLYTFDETTATLVARTANDATMFTSPNSTFTRSFDTGGGYPSFYTLTAGQRYAVGVVIIATTMPTLVGINTGSTASAVMNSLSPRIAGAISGQTDLPVVPSSFSNTSFMVWSRLS
Physico‐chemical
properties
protein length:516 AA
molecular weight: 51851,63970 Da
isoelectric point:4,09612
aromaticity:0,08140
hydropathy:0,05407

Domains

Domains [InterPro]
DC_1340
STR
92–259
DC_1340 DC_2175
PTHR24637
Unmapped
130–320
PTHR24637
DC_1460
STR
249–300
DC_1460
WJZ48556.1
1 516
Architecture
STR
RBD
STR 92-300 | RBD 301-516
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Actinomycetia phage DSL-LC01
[NCBI] 		3058956 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Actinomycetia bacterium
[NCBI] 		1883427 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > unclassified Actinomycetes

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WJZ48556.1 [NCBI]
Genbank nucleotide accession
OQ999401 [NCBI]
CDS location
range 106140 -> 107690
strand -
CDS
ATGGCAGTTAGAAGACTAGGTCTCGCAAATCCTCTTAGTGGAACTACGGCCACAGTAGGGACAGCTACAACTACTAGCGTAGCTTCTGTAATCGTCACAAACAAAGGATCTTCTACCGCGTCTGTGACAATCTATGTCGTACCGAGCGGGTCATCTGGCTCTGAAACAGAACGAGTCTATTTAGCCGCAAATCTTGAAGTAGGTGTTGGGCAAGTATTTGAGACGTTTAGATTTGCTCTCCAAACTGGAGACGCTGTCCTTGCGACGTCCAACTCGTCAAACGTATCGTATTCGTTGACAGCAGTTTACGAAACCGAAGGTCAGTCAAACATCGTCTACTCGCCGACAGCTCCTGGCTACCCAGCAGTTGGTGACATTTGGATTGACAGCGACACTGGCGCTGCATACTTTTACACTCCGCAAGGATTTCAATCTCTCGCGTACGTTGGCGCTGGTCCAACTGGCCCGGCGGGTCCAACTGGCCCGGCGGGTCCAACTGGCCCGACTGGTCCGGTCGGCGCTGGTGTAGAGATCAGAGGAACATTCGCGTCTCTCGAGCTTCTAAATCTTGACTACCCACTGGGGAACGCTGGAGATGCGTGGCTTATTGGGACAGACTTGTACGTATGGTCCGAGGTAGACGAAGAGTACATCAACACTGGCGAAATCGTTGGACCGCAGGGACCGACTGGCGCTACTGGCCCAACAGGTCTTACTGGAGCGACAGGTCCTACTGGACCGATAGGCCCAACAGGACCTGAAGGCGGACCGACAGGGCCGACCGGCCCAACTGGGCCCACTGGACCCACGGGCCCTATCGGAGAGACTGGTCCGACAGGAGCCGACTCGACTGTTACTGGCCCAACAGGTCCGACTGGACCTACTGGTCCTCAGGGGCAGACTGGTCTTACTGGAGTACAATTCCAGCCTACAGCTCCAACAGGACCAGGTGTTGACGCACTATGGTACGACACAGACGAGGTTGGCGCAACTGCTGTCATTCTTCCGTACTACAAAAGCGCTAGCGGTCAAGGCACAAGCTTTATTGATGTCCGCAACAGAGCAGATGTAAACGGAGTTCTCTCATCCACAAGTGGAGTTGTCTATCTAACGTTCTTTACACCGCTTGAGTCTGTCACCGTCACTGACATTACTCTGGCGACAGCAACGACAGCAGCAGCATCAGTCACAACAGTGCGTGCAGGACTTTATACATTTGACGAGACAACAGCTACTCTTGTCGCTCGAACAGCGAATGATGCGACGATGTTTACCTCTCCAAACAGTACGTTTACACGATCATTTGACACTGGTGGAGGCTATCCTTCTTTCTATACTCTTACCGCCGGTCAGCGTTACGCTGTCGGGGTTGTTATTATCGCTACAACAATGCCAACTCTTGTAGGTATAAACACAGGATCCACTGCGTCCGCTGTCATGAACTCTTTGTCTCCTAGAATCGCAGGAGCAATTAGCGGTCAGACTGACCTGCCTGTCGTGCCAAGCTCATTTAGTAACACAAGCTTCATGGTCTGGTCGAGGTTGTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
db2c484040711151ce5092d4bd4520aef1c7a92e43a3c57b922513368b7a7752
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7330
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50