Protein

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Genbank accession
AHK11540.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSLEKMECGVNYTTETIRTNINGLIDQNVSGIKSLESLGLYDGMNVNVNGFYVGTTVGGGNFVYDISKDKADHNGGTIIAPEAIVAWDGSAVNIATLLDWTGTGVGCFVRPEGVEKYNVESFGGLRSPELCTASMQKLLDTYGVMVGVSGVEYTIRRVFFNRPVYVDLNRCTIRGDVFTTSGFRADEIDGIYVKNGHFVHTKTAGVYVQALTLWDCQNITLEDLTIDGFSQFSINITHTINGEYSGFRLDRVKVTNGGNFFSDPSNIANCLEFFSSNSSAIRTDTLIKDCEFSLMPDARGNIAKLGLCRDTKVIRSKFSSLRATFVGSSGIQSGSNNNPLNGENKVTMQDCEINCIDTTDGYHAYDGTGEQTLIRTNITGNGGSIYAPPKGAQVQKWTFIDSNIADVFLYDNPINQIEKLSVIRSFIKSIMLEKGASIVSSDPCVVQEVYFENATMDQVNFRCTLPSIKITGPNTYINSILLGVSQMDVGKLEVSGRAELGDIRYTDAVGNVDIIVLSDAVLNKISLRQNNLKNLLVKNSECRIKTNQEWFLNGSESCRFVGNTIQENFDLPTTTATNVLMFYNDATVSGNAITSVPNRTYYITADNCNVRASNNVYEKSNNTAYTNIGAGEVRNFNCLINDTMLPFTFSSLPNSIAEKPIAFGQLALASGAWYQSVGTVSVADWKRITNV
Physico‐chemical
properties
protein length:691 AA
molecular weight: 75595,20540 Da
isoelectric point:5,01868
aromaticity:0,09117
hydropathy:-0,12214

Domains

Domains [InterPro]
DC_2004
STR
9–295
DC_2004
IPR011050
STR
178–413
IPR011050
AHK11540.1
1 691
Architecture
STR
STR 9-413 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AHK11540.1
1 691
Domain Start End Length (AA) Confidence
N-terminal 1 130 130 0,9903
Central domain 131 642 513 0,9881
C-terminal 643 691 48 0,9710
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-130
Central
131-642
C-terminal
643-691

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella sp. phage 1/40
[NCBI] 		1458860 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella sp.
[NCBI] 		50422 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales
Host Shewanella sp. 40
[NCBI] 		1386773 Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHK11540.1 [NCBI]
Genbank nucleotide accession
KJ018211.1 [NCBI]
CDS location
range 78104 -> 80179
strand +
CDS
ATGTCTTTAGAAAAGATGGAGTGTGGTGTTAACTACACCACGGAAACAATTAGAACTAATATTAATGGTTTAATTGATCAAAATGTAAGTGGTATTAAATCATTAGAGTCCTTGGGACTCTATGATGGCATGAATGTAAATGTTAATGGATTCTATGTTGGCACTACCGTGGGTGGTGGCAACTTTGTATATGATATTAGCAAAGATAAAGCAGATCACAATGGTGGTACTATTATAGCGCCTGAGGCTATTGTAGCGTGGGACGGGTCTGCTGTAAATATTGCAACGCTGCTTGATTGGACTGGCACTGGTGTTGGGTGCTTTGTGCGGCCAGAAGGCGTGGAGAAATACAATGTCGAATCATTCGGGGGACTACGAAGTCCAGAGTTATGCACAGCGTCAATGCAAAAACTTTTAGATACTTACGGCGTGATGGTCGGTGTGTCTGGTGTAGAATATACCATCCGCAGGGTTTTCTTTAATCGCCCTGTCTACGTAGATTTAAACCGATGTACAATTCGCGGTGATGTGTTCACAACATCTGGTTTTCGCGCTGATGAAATTGACGGCATTTATGTTAAAAATGGCCATTTTGTCCATACAAAAACGGCTGGTGTTTATGTTCAAGCGCTGACATTATGGGACTGCCAAAACATCACGCTCGAAGATTTGACGATTGACGGTTTTAGTCAATTCTCAATAAATATTACCCACACTATTAACGGTGAGTACAGCGGCTTCAGGCTGGACAGAGTAAAAGTAACGAATGGCGGAAACTTCTTTTCTGATCCAAGTAACATTGCAAATTGCTTAGAGTTCTTTTCTAGTAACTCTTCCGCAATTCGTACAGATACACTAATCAAAGATTGCGAGTTTAGCTTAATGCCAGATGCAAGAGGCAATATTGCAAAGCTTGGTCTGTGCAGAGACACGAAGGTTATTCGTAGCAAGTTCTCATCTTTGCGCGCTACGTTTGTCGGCAGTTCAGGTATACAGTCAGGCTCAAATAACAATCCATTAAACGGTGAAAATAAAGTAACGATGCAAGATTGCGAAATAAACTGCATTGATACGACAGATGGTTATCATGCATATGACGGCACTGGTGAGCAAACGCTAATAAGAACGAACATTACAGGTAATGGCGGCAGCATTTACGCGCCACCGAAAGGTGCTCAAGTTCAGAAATGGACGTTTATTGACTCAAACATAGCAGACGTTTTTTTATATGACAACCCTATTAATCAAATTGAAAAACTAAGCGTTATTAGATCGTTTATAAAGAGCATTATGCTGGAAAAAGGTGCGTCAATTGTTTCTAGCGACCCATGCGTTGTGCAGGAAGTTTATTTTGAAAATGCAACAATGGACCAAGTTAATTTTAGATGCACGTTACCATCAATCAAAATCACTGGGCCTAATACCTATATTAATTCGATTTTATTAGGTGTCAGTCAAATGGATGTTGGTAAGCTAGAAGTTTCTGGTAGGGCAGAGCTAGGTGATATTAGGTACACCGACGCGGTTGGAAATGTTGATATAATTGTCCTGTCAGATGCTGTATTAAATAAAATATCTTTAAGGCAAAATAATCTAAAAAACTTACTTGTTAAAAATTCTGAGTGTAGGATTAAGACCAATCAAGAGTGGTTTTTAAATGGCTCTGAAAGTTGCAGATTTGTTGGAAACACAATACAAGAGAATTTTGATTTGCCAACCACAACTGCAACAAATGTATTAATGTTTTATAATGACGCTACGGTGTCAGGAAATGCAATTACAAGTGTGCCAAACAGAACTTATTACATAACAGCAGACAACTGCAATGTCAGAGCATCAAATAATGTGTATGAGAAATCAAACAACACAGCCTACACAAATATAGGCGCAGGAGAGGTAAGGAATTTCAACTGCTTAATTAACGACACAATGCTCCCATTTACTTTTAGTTCATTACCTAACTCGATAGCTGAAAAGCCTATAGCCTTCGGTCAGCTAGCGCTTGCGTCTGGGGCTTGGTATCAATCTGTCGGTACAGTAAGTGTCGCAGACTGGAAGCGGATTACAAATGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
18b16773ee6c6921da8b61495a653b6f2b06e8618e16b5279fc70fba2d670fcf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8214
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50