Protein

View in Explore
Genbank accession
CAC81909.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,63
Protein sequence
MNPEDDRPGDFPISQYPVHMLPLNHLIDNLFVRGSLGVGFGMDGQGLYVSNITVEDCAGSGAYIWPMKQYSLISL
Physico‐chemical
properties
protein length:75 AA
molecular weight: 8259,31920 Da
isoelectric point:4,39555
aromaticity:0,10667
hydropathy:-0,00800

Domains

Domains [InterPro]
IPR011050
STR
1–69
IPR011050
IPR012332
STR
1–73
IPR012332
IPR015331
RBD
1–65
IPR015331
CAC81909.1
1 75
Architecture
STR
STR 1-73 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CAC81909.1
1 75
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0067
Central domain 11 64 55 0,9991
C-terminal 65 75 10 0,1051
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-64
C-terminal
65-75

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage MB78
[NCBI] 		52971 Uroviricota > Caudoviricetes >
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CAC81909.1 [NCBI]
Genbank nucleotide accession
AJ277754.2 [NCBI]
CDS location
range 923 -> 1150
strand +
CDS
ATGAACCCAGAAGATGACCGCCCGGGGGATTTCCCCATTTCTCAGTACCCGGTACATATGCTCCCGTTAAACCATTTGATAGACAATCTATTTGTTAGAGGTTCGCTGGGGGTAGGTTTCGGTATGGACGGGCAAGGTCTGTATGTCTCTAACATAACCGTCGAGGATTGCGCCGGTTCTGGGGCTTATATCTGGCCCATGAAACAGTATTCACTAATATCGCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
129c41b4a3203c8ca65b77e12bb3b7c451b3b125bd8f8c7e86fa27570e7d9b42
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4624
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A 2.3Kb SalI-HindIII fragment of phage MB78 genome which contains the genes for restriction-modifcation system Chaturvedi,D. and Chakravorty,M. 2003-04 — GenBank