Protein

View in Explore
Genbank accession
UJP30003.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPMNFVVNHVPDGVPVRVFIGEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYYDAGRGYLDIHPEGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGGPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVLSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAATNGMYKDNGKSKTLASVTAEIQYQLLDENSTPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDSQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSIPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93782,76590 Da
isoelectric point:5,31509
aromaticity:0,09742
hydropathy:-0,36491

Domains

Domains [InterPro]
DC_0118
STR
1–686
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
UJP30003.1
1 852
Architecture
STR
RBD
STR 1-686 | RBD 703-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UJP30003.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,9675
Central domain 233 431 200 0,6223
C-terminal 432 852 420 0,1590
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-431
C-terminal
432-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CKT1
[NCBI] 		2877937 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella pullorum
[NCBI] 		605 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UJP30003.1 [NCBI]
Genbank nucleotide accession
OK143508 [NCBI]
CDS location
range 14112 -> 16670
strand -
CDS
TTGGCGCTAGTAATCCACTACACACGAAACGAAGACGGCACGTTTGATGTCAAGCGCTACCGCGATAATCCGATGAACTTCGTCGTTAACCACGTTCCAGACGGGGTGCCGGTACGTGTTTTCATTGGCGAAATTGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCAGCTGGTGGTGGCGCTATTAAAGGCGTCATGAAGATTTTTAGCGTTATCCTTAAACCGCTGGCGAAACTATTATCGCCGTCCGTGAAAGGTGCGTCCTCGAACCTTGCGAACTCGCAGGCGGATTCCCCGAACAACAGTCTCACCGACCGTAACAACAAGGCCCGCCCATACGAGCGCAGCTACGACATCTGCGGAACGGTGCAAACTATCCCAAATAACCTTATGTCTACTTATAAGGTGTTTAACGCCGCTGGTAAAATTGTAGAGTACGGCTATTACGACGCCGGGCGTGGTTACCTAGACATACACCCTGAAGGTATAACTGACGGGGACACCCGCGTATCAGACATAACAGGCACGTCGGTTGCCGTGTACGCACCATATACATCACCCAATAACACATCTACACCGCAGGTCATGGTTGGGGGCCCCATAGAGCAAGGCCTATACATTACCGTAGAATCTAACGAAGTTGACGGCGTGGTTCTTAAAGCACCGAACGGTCTGGGCATTTCTTTCTCTTACATGTCCGGGTATCCGTCTTTGTCTGGAAACATTGGCACGATATATGACCCAACAGGTGGTTCGGATTTTTCTGGGGTGTTGGTGCCTAATGATACATTTTCGCTGGTGTCAGCGTGGACAAATACGGACGTCGACCTATCCGGCGGCGGGTATCAGGTGTTAAGCGTATCCGAAGGGACCGTTACCTTTATAGTGCCCGGTGGCCTCATTGGTAGGTGGCAAGAAATAAGACCCGGTTCATTTTTCCGCGGTGATGGAGAGGCCTCGCTGCAACCAGACAACACGTATGAGAAAACATTAACCGATTGGGTTTCAATAAACCGTACCGAGGTTGAGCGCATAGTTGCCAATATCGCCGCCACCAATGGTATGTATAAAGACAACGGCAAATCTAAAACACTAGCGTCGGTTACCGCGGAGATACAGTACCAGCTGCTTGATGAAAATAGCACCCCTTATGGGCCGATATACACTGCACAAGGAACCGTGTCCGGGCGAACCCCAGACTACAACGGTGTCACTATTTACGCCGACCTGCCGGTTGTGTCGCGGGTGCGGGTGCGCGCCAGAAGGGTGACAGACCTCGACTTTAATTTCGAAGGCTCAGTGGTAGACGAAATAACCTACGTTAACCTGTACGGCCAGACCCGCGACAACACCCCGCACTACGGCAACCGAACCACTGTGCACTCAATGCGTAAGCAGACACCACGGGCTGCCGAAGTTAAGCAACCTCAGTTGCGCATGATTGCGACCGAAATGGTATACAAATACCTCGGTAATGGTGTTTTTGAAGACACGATGACCCCCAATACGCAAGCCGTGCAATCTCTTATCCGCCTGGCGCGTGATCCGGATGTGGGGGGTTTAAACCTGACGGTACGCAACATGGATAAGTTACTTGCTGTGCAGAACGAGGTCGAAGCGTATTTCGGTGACAAACAGGCGGGGGAATTTTGCTACACGTTTGATGACTATAAAACCACCATGCAGGACATAGTTAGTACTATAGCAGACGCCATATTCTGCACCCCATATCGGCGTGGGGCGGATATCCTTCTCGATTTTGAGCGCCCCCGCATGGGTCCTGAGATGGTGTTCACCCACCGAAGCAAGGCCGGTACTTCTGAAAAGTGGACCAGAACATTTAACGATTCTCAGGTTTTTGACAGCCTTAAATTCTCGTACATAGACCCTAAGACGAACGTCAAAGAGACTATAACCATACCCGAAACCGGGGGCCTTAAAACGGAGACTTATGACTCTAAAGGAATCCGCAACTATAAGCAGGCTTTCTGGGCGGCAAACCGTCGTCATCAGAAGAACATTTTAAAGAAAATTTCGGTGTCGTTTACCGCCACTGAAGAGGGTATTTTTGCCCTTCCGAATCGTGCCGTTAGTGTGGTTAAGGGTTCACGTATGGCGACCTACGACGGCTACGTAACCGCGGTAAACGGGCTCACCGTAGAACTGTCACAACCAGTTAAGTTCACCTCGGGAGATGACCATTCTTTGATTCTCAAGTTACGTGACGGCGGCGTGCAAAGTGTTAATGTAGTCCCTGGAGCGCACGACCGGCAGGTAATCATGACGTCAATACCGCAAGAAGCCATTTACACAGGTAATAGTGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCTGGCGATGACCGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTACCGCCTTTCGGTCGTGCGTTCTCTAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
54f0d96cb3ecb955caa558dd4b3624ba0df4b16f023a568d4aa7bca6d623dc30
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3064
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella phage CKT1 significantly relieves the body weight loss of chicks by normalizing the abnormal intestinal microbiome caused by hypervirulent Salmonella Pullorum Huang,J., Liang,L., Cui,K., Li,P., Hao,G. and Sun,S. 2022 — GenBank