Protein

View in Explore
Genbank accession
YP_010756077.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTITPVTVTPFGGSIGPLNRVTPFTHRDNATFLSILRGIVEYLQGSLQDDINSELERIINEFRDIQEGDQGRYDEFIAEVNTLVAAINNRVGPESMHRVSLTGDYTLTIDPTWPNAHPIRFQFTQDTTGGRIVSFGAGIVGSALVDPTPSAMTELELIPDGAGNWMLRTLNKARVIDVAKDFGARPGGVFDNTVKFNAAMTEARASKCEVFIPAGVWFVSGTVDFSGVVVRGVIAGYDNHNGTIIRGGGSNLLFDQGSTSLDYNRMGLHGIRFENCATGFRISYSVYSHFSDVDVIDTTADAIIVGDVTIIGPIWNMFDRVKGVSTNGYGLRLAGMNWCNSNVFDTCFFDGTTGAINILSASGFGSLDNVFRATEIRSSVGPGIVFNGTNRSTTLEKCFIEPKGPAVVVNNSTVDLILDGNVYGSTRNNVVGYGPYFVEHKAATFNVRVIGGWITTNAVPEQADLRFVGSALPASMTLELLAEPNTVGIQSSGYKIFDETVISAAPRTQRGDFRIRKFSAPQISVAYGDGSKEFVLKRNGTQGGTDFGVEFIDDGNKVWSTGTNGMFKVLGHLASAKVVPATTLGSISGRIPLYNADESIAGSIPVMTGTT
Physico‐chemical
properties
protein length:611 AA
molecular weight: 65591,07290 Da
isoelectric point:5,19568
aromaticity:0,09329
hydropathy:-0,00278

Domains

Domains [InterPro]
DC_0837
STR
1–267
DC_0837
IPR011050
STR
172–437
IPR011050
IPR024535
ENZ
178–230
IPR024535
IPR012334
STR
179–504
IPR012334
YP_010756077.1
1 611
Architecture
STR
STR 1-504 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010756077.1
1 611
Domain Start End Length (AA) Confidence
N-terminal 1 191 191 0,9847
Central domain 192 488 298 0,9871
C-terminal 489 611 122 0,9330
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-191
Central
192-488
C-terminal
489-611

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_N3_8
[NCBI] 		2509748 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010756077.1 [NCBI]
Genbank nucleotide accession
NC_073480.1 [NCBI]
CDS location
range 12335 -> 14170
strand +
CDS
ATGACTATTACACCGGTTACGGTTACCCCTTTTGGAGGTAGCATCGGGCCACTCAACAGAGTAACCCCGTTCACGCATAGGGATAACGCAACGTTCCTGAGTATTTTGCGTGGCATTGTGGAGTACCTTCAAGGTTCGCTCCAAGACGATATCAACAGTGAACTTGAACGCATTATCAATGAGTTCCGCGATATTCAGGAAGGGGACCAGGGGCGCTATGACGAATTCATTGCAGAGGTCAACACCCTTGTAGCGGCAATCAACAACCGTGTTGGCCCAGAGTCCATGCACCGGGTATCCCTGACCGGAGACTACACCCTGACCATTGATCCTACGTGGCCGAATGCCCACCCTATCCGCTTCCAATTCACGCAGGACACAACAGGTGGCAGGATTGTGAGCTTCGGCGCGGGCATTGTCGGCAGCGCACTTGTTGACCCTACCCCGTCCGCCATGACGGAGCTTGAACTGATTCCAGACGGGGCAGGTAATTGGATGCTCCGGACCCTGAACAAAGCACGGGTTATTGACGTGGCAAAGGATTTTGGGGCACGCCCTGGCGGAGTGTTTGACAACACGGTGAAATTCAATGCCGCCATGACTGAAGCCCGCGCCAGCAAGTGCGAGGTCTTTATCCCTGCCGGTGTATGGTTCGTGTCCGGTACCGTGGACTTTTCCGGTGTTGTGGTTCGTGGCGTTATCGCCGGTTATGACAACCACAACGGCACTATCATTCGTGGTGGGGGTTCCAATCTCCTGTTTGACCAGGGTTCCACGAGCCTTGATTACAACCGAATGGGTTTGCACGGTATTCGTTTTGAGAACTGTGCAACAGGGTTCCGTATCAGCTATTCCGTGTACTCGCACTTCAGTGACGTAGACGTCATTGACACAACGGCTGACGCTATCATCGTTGGCGACGTAACCATTATCGGCCCAATTTGGAACATGTTTGACCGTGTGAAAGGTGTTTCCACTAACGGCTACGGGTTACGTCTTGCCGGTATGAATTGGTGCAACTCCAACGTCTTTGACACATGTTTCTTTGACGGCACCACGGGTGCTATCAATATTCTCTCCGCCAGTGGTTTTGGTTCCCTTGACAATGTTTTCCGTGCCACGGAAATACGATCTAGTGTTGGCCCTGGCATTGTGTTCAATGGCACTAACCGCTCTACCACGTTGGAGAAGTGTTTCATTGAGCCGAAAGGTCCGGCTGTTGTGGTCAACAACTCCACTGTTGACCTGATCCTTGACGGCAACGTGTACGGCTCCACCCGTAACAACGTTGTTGGTTACGGTCCGTACTTTGTGGAGCACAAGGCGGCTACGTTCAATGTCCGTGTCATTGGGGGATGGATAACAACGAACGCTGTACCGGAGCAAGCTGATTTGCGTTTCGTTGGTTCAGCGCTTCCCGCGTCCATGACACTTGAACTCCTGGCGGAACCAAACACCGTCGGTATTCAGTCCAGCGGCTACAAAATCTTCGATGAAACCGTCATTAGTGCCGCGCCACGAACGCAGCGCGGAGACTTCAGGATTCGCAAGTTCAGTGCCCCGCAAATCTCCGTGGCCTATGGGGATGGGTCGAAGGAATTTGTGTTGAAGCGGAACGGAACCCAGGGCGGAACTGATTTTGGGGTCGAGTTCATTGATGACGGTAACAAGGTGTGGAGTACCGGAACTAACGGCATGTTCAAGGTGCTCGGTCACTTGGCAAGCGCAAAGGTAGTGCCCGCAACAACACTTGGCTCAATCTCTGGGCGTATCCCGCTCTACAACGCGGACGAATCCATTGCAGGTTCCATCCCCGTCATGACGGGAACAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4974e184c03cb58043019fcf940646edfe5b682bac654770301b4b20cf94622c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7056
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank