Protein

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Genbank accession
YP_009004204.1 [GenBank]
Protein name
phage virion protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSDTIVGADVNVLDGGSLSLELVRLRNEVSCLERNNTLNVLTSLDQLGLPVTASMKDIAEKLPQNSILMFDGVAGTQGSTLPLPYFTWPTKNYMSGHITAWRGNDVMKCYFEWRNESHVARADYNRYNVPATLPTQWTFMRDCMVNKNNAGPGSWGNLLSNIWVDGTYYFSAAQMAGFTDRPTSAGSFVKVTNTYNLPTSDRIYTVVENNGSTRTYTRQNAGAWRNVPVVFPQGVADSELRVGDMKVASNGRIHMRVSGSIVGQVAYTGEA
Physico‐chemical
properties
protein length:271 AA
molecular weight: 29873,28130 Da
isoelectric point:6,82775
aromaticity:0,09594
hydropathy:-0,27860

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009004204.1
1 271
Domain Start End Length (AA) Confidence
N-terminal 1 19 19 0,9862
Central domain 20 218 200 0,0154
C-terminal 219 271 52 0,9954
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-19
Central
20-218
C-terminal
219-271

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CR8
[NCBI] 		1455076 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Caroctavirus
Host Citrobacter rodentium
[NCBI] 		67825 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009004204.1 [NCBI]
Genbank nucleotide accession
NC_023548.1 [NCBI]
CDS location
range 34728 -> 35543
strand +
CDS
ATGTCAGATACTATCGTAGGTGCAGATGTAAACGTATTAGATGGAGGCTCCCTGAGTCTTGAGCTTGTCCGTCTTCGAAATGAGGTGTCATGCCTTGAGCGTAACAACACACTTAACGTTCTAACGTCTCTAGACCAGTTAGGACTTCCTGTCACAGCATCAATGAAGGACATCGCGGAGAAACTGCCGCAGAACTCCATCCTCATGTTTGATGGTGTAGCTGGGACCCAAGGCTCTACGCTGCCGCTGCCATATTTTACGTGGCCCACCAAGAACTATATGTCTGGACATATTACAGCTTGGCGTGGTAATGACGTGATGAAGTGTTACTTCGAGTGGCGCAACGAGTCCCATGTGGCCCGCGCTGACTATAACCGTTACAACGTTCCTGCGACACTTCCGACTCAGTGGACATTCATGCGCGACTGTATGGTGAATAAGAATAATGCTGGTCCGGGTTCATGGGGAAACCTTCTGTCTAACATCTGGGTAGACGGTACATACTACTTCTCTGCTGCTCAAATGGCTGGCTTCACTGACCGTCCTACCAGTGCTGGTAGCTTCGTGAAGGTTACTAACACCTACAACCTTCCTACCTCGGACCGTATCTACACGGTAGTTGAGAACAACGGGTCTACCAGAACGTATACGAGGCAGAACGCAGGCGCATGGCGTAACGTGCCTGTAGTCTTCCCTCAGGGCGTGGCCGATAGTGAGCTGCGAGTAGGGGACATGAAGGTTGCATCCAATGGTCGTATTCATATGCGAGTCAGTGGTAGCATTGTGGGGCAGGTTGCCTATACAGGCGAGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6edc5a9a646caf0f070e87c438d54be3595b9a1a432df505277c6b0d8a456490
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6256
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterisation of Citrobacter rodentium bacteriophages and their in vivo assesment as antimicrobial agents Toribio,A.L. 2010 — GenBank