Protein

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Genbank accession
YP_009284663.1 [GenBank]
Protein name
major tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSLPNGSKVFIERTRAAQEITASAISNAENPVATVNSTTGLAVGDFVLVTESVWAGLKNRVLRIKTVTADTSITLEGDKSTSTVNLNKYPAGGASTLVKITSWIEIPCVSDIAKSGGEQQYYTKQCLSDDRERQIPTFKSATSIAYTFDFDYANPVTDLLIGYDEDGKTRALYMFVPKASFPIRAFSGVPSFDDVPNTVMNEDETTILTISLDGKYVHMQGEVD
Physico‐chemical
properties
protein length:224 AA
molecular weight: 24359,08620 Da
isoelectric point:4,74943
aromaticity:0,08482
hydropathy:-0,16027

Domains

Domains [InterPro]
DC_0037
ATT
1–51
DC_0037 IPR014918
YP_009284663.1
1 224
Architecture
ATT
TAS
ATT 1-51 | TAS 52-217 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009284663.1
1 224
Domain Start End Length (AA) Confidence
N-terminal 1 218 218 0,5667
Central domain 219 218 1 0,1387
C-terminal 219 224 5 0,9546
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-218
Central
219-218
C-terminal
219-224

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_NBD2
[NCBI] 		1852563 Uroviricota > Caudoviricetes > Drexlerviridae > Vilniusvirus NBD2 >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009284663.1 [NCBI]
Genbank nucleotide accession
NC_031050 [NCBI]
CDS location
range 19104 -> 19778
strand +
CDS
ATGTCTCTTCCAAATGGTTCAAAGGTATTTATCGAGCGCACCCGCGCGGCGCAGGAAATTACCGCAAGCGCGATCTCCAACGCAGAGAATCCGGTTGCAACCGTAAATTCAACAACTGGACTTGCAGTTGGTGATTTTGTGCTTGTCACGGAATCCGTATGGGCAGGCCTGAAAAACCGCGTGCTTCGTATCAAAACCGTAACCGCAGATACAAGCATCACGCTTGAAGGCGATAAGAGCACGAGCACGGTAAACCTGAACAAATACCCAGCGGGCGGCGCGTCAACTCTGGTTAAGATCACCTCCTGGATTGAAATTCCGTGCGTAAGTGATATCGCCAAATCCGGCGGCGAGCAGCAGTATTACACTAAACAGTGTTTATCTGATGACCGCGAACGCCAGATCCCAACCTTCAAGTCTGCAACGTCGATCGCGTACACCTTCGATTTCGACTACGCAAACCCCGTGACTGATTTGCTGATTGGTTACGATGAAGATGGGAAAACCCGCGCGCTTTACATGTTCGTGCCAAAGGCAAGCTTCCCGATCCGCGCCTTCTCCGGCGTGCCGTCATTCGATGACGTGCCGAACACGGTAATGAACGAGGATGAAACAACCATCCTGACAATCTCCCTGGACGGTAAATACGTTCACATGCAGGGCGAAGTTGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
856738732162c58e6d2b1ab58b6e5019bf44646a7b04452decddf6db7f45e297
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8943
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome of E. coli phage vB_EcoS_NBD2 Truncaite,L., Kaliniene,L., Zajanckauskaite,A. and Meskys,R. 2011-08-10 — GenBank