Protein

View in Explore
Genbank accession
XQW41509.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTKNMVVKGSKGGSAKPHTPREMEDNLISINKIKVLLAVSDGETDANITLKDIYLNDVPVVAQNGTVNYDGVNFEYRPGTQTQDYIKGMEDAASEVTIQRTLTTDNPYIINVTNKTLSAIRLKMLMPRGVMTKDNGDMVGVSVQYAVDLAVDGGAFAEVMRDTISGKTMNGYDRSRRVNLPSFNNQVLLRVRRITADSTDAKVVDEIRVQSYAEVIDAKFRYPLTGVFFIEFSSDAFPQMPNIAIKKKWKLINIPSNYDPVTRTYTGNWNGVFKKGWTNNPAWVLYDLITNQRYGLDQRELGIAVDKWALYDAATYCDQMVPDGKGGTEPRYLCDVVIQSQVEAYQLVRDICSIFRGMSFWNGESLSIIIDRPRDPAYIFTNDNVVGGSFTYMFASEKSMYTQCNVTFDDEQNMYQQDIEGVFDLEGSLRFGYNPTSITAIGCTRRSEANRRGRWILKTNLRSTTVTFATGLEGMIPMVGDVLGISDNFWSSNLTLALSGRLMEVQGLQVFTYFKVDARPGDYIIVNKPDGAPVRRTIANVSADGKTITLNVGFGFAVDSGAVFAIDRSDVALQQFVVTAINKGDGDDEFNYSITAVEYDPNKYDEIDYGVNIDDRPTSIVDPDNMQPPTDIKVGSYSRVVQGMSVETMVISWTKAQYASMYDVQWRKDNGNWINIPRTPNIEVEVEGIYAGNYFVRVRSISSGQNVSPWSPVVNVGLTGKIGVPSAPVSLTASTTEVFGIRVKWGMPPGSDDTAYIELHQSPDGTDENASLITMIPYPQFEYWHAVLPAGYVNYYKARAVDRIGNVSDWTPFARGMATDDFDAIAEVVKIDIENSEGFKELAQSAIDSAQKIKDTAQSIMQNAIANDADVKLLRKESGTRSAQFKQTISLIADETQARVSQVTALEAKIDNDITAQITQVNEAIATETETRTNQVNALDAKFGDVNANFTQVNQAIADETSARVSADSALSTAVGNNTAAIAQKLSSWVNNGSIGASYTIDLGIKVGNSEYGAGMNMQLVSVNGVTKAQTVWDVDRFAVGRIAGGALASLPFFIENNQVFMQSAIIKDGSISNAKIGNVIQSNNWNGSTVGWAITKSGAATFNGVIVRGNISATAGQFSFTGNSGVSIDSNGVTINLSGGGRIVLGTW
Physico‐chemical
properties
protein length:1149 AA
molecular weight: 125697,73480 Da
isoelectric point:4,87601
aromaticity:0,08964
hydropathy:-0,21010

Domains

Domains [InterPro]
DC_0014
STR
1–1149
DC_0014
IPR053171
Unmapped
3–873
IPR053171 IPR015406
IPR055385
ATT
93–218
IPR055385 IPR032876 IPR013783
IPR036116
STR
643–715
IPR036116
XQW41509.1
1 1149
Architecture
STR
ATT
STR
ATT
STR
STR 1-92 | ATT 93-218 | STR 219-339 | ATT 340-488 | STR 489-1149
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XQW41509.1
1 1149
Domain Start End Length (AA) Confidence
N-terminal 1 502 502 0,8602
Central domain 503 1000 499 0,0544
C-terminal 1001 1149 148 0,4000
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-502
Central
503-1000
C-terminal
1001-1149

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage YP10S2
[NCBI] 		3401080 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Yersinia ruckeri
[NCBI] 		29486 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XQW41509.1 [NCBI]
Genbank nucleotide accession
PV092591.1 [NCBI]
CDS location
range 41009 -> 44458
strand +
CDS
ATGACTAAAAATATGGTAGTCAAAGGGAGTAAGGGCGGAAGCGCAAAGCCTCATACGCCGCGCGAAATGGAAGATAACTTGATTTCAATAAATAAAATCAAGGTATTACTAGCCGTGTCCGATGGTGAAACCGACGCCAATATCACGCTAAAAGATATCTATCTTAACGACGTGCCAGTTGTAGCGCAAAACGGAACAGTTAACTACGATGGCGTCAATTTCGAATATCGCCCAGGCACGCAGACTCAAGATTACATCAAGGGCATGGAGGATGCAGCATCGGAGGTGACAATTCAGCGCACGCTAACCACTGATAACCCCTACATCATCAACGTAACAAACAAGACGCTTTCCGCCATCCGATTGAAGATGTTAATGCCTCGCGGAGTCATGACAAAAGACAATGGCGATATGGTAGGCGTAAGTGTTCAATACGCGGTTGATCTGGCGGTTGATGGTGGAGCATTTGCCGAAGTAATGCGCGATACTATTAGCGGCAAAACAATGAATGGGTATGACAGAAGCAGAAGGGTTAATCTTCCATCATTCAACAATCAGGTGCTGTTACGAGTTCGCAGGATTACGGCTGACTCAACTGACGCGAAAGTTGTTGATGAGATCCGAGTGCAATCATATGCGGAAGTGATTGACGCTAAATTCCGCTACCCCCTGACTGGTGTATTTTTCATCGAGTTCAGTTCGGACGCTTTCCCGCAGATGCCAAACATTGCGATCAAGAAGAAATGGAAGTTGATTAATATTCCATCAAACTATGATCCGGTTACGCGAACTTATACGGGCAACTGGAACGGCGTGTTTAAAAAGGGATGGACTAATAACCCAGCCTGGGTGTTGTATGATTTGATCACCAATCAGCGCTACGGACTCGATCAGAGGGAGCTTGGAATCGCGGTTGATAAATGGGCGCTTTACGATGCAGCGACATATTGCGATCAGATGGTTCCAGATGGCAAGGGAGGAACGGAGCCGCGTTACTTGTGCGACGTTGTGATTCAAAGCCAGGTTGAAGCGTACCAACTAGTAAGGGATATTTGCTCTATCTTTCGTGGTATGAGTTTTTGGAACGGGGAAAGCCTGTCAATCATCATCGACAGACCTCGCGATCCGGCTTACATCTTCACTAATGATAACGTAGTAGGCGGCTCGTTTACTTACATGTTCGCCAGCGAAAAAAGCATGTATACGCAGTGTAACGTCACTTTCGACGACGAACAAAACATGTATCAGCAGGACATTGAGGGCGTGTTTGATTTAGAGGGTTCATTACGATTCGGCTACAATCCGACAAGCATCACCGCCATCGGATGCACGCGACGCAGTGAGGCTAATCGCCGTGGGCGTTGGATTCTTAAAACGAACCTGCGCAGCACTACGGTTACTTTTGCCACTGGATTAGAGGGCATGATTCCGATGGTTGGCGACGTTTTAGGAATCTCTGATAACTTCTGGTCAAGCAACTTAACCCTTGCTCTCTCAGGTCGCCTGATGGAAGTTCAAGGGTTGCAAGTTTTCACTTACTTTAAAGTGGATGCTCGCCCAGGTGATTACATCATCGTGAATAAGCCGGATGGCGCACCAGTTCGACGCACTATCGCTAACGTATCGGCTGACGGAAAAACAATCACGCTAAACGTTGGTTTCGGTTTTGCGGTTGATTCCGGAGCGGTATTCGCAATCGACAGGTCTGACGTTGCTTTGCAGCAGTTTGTTGTAACGGCAATCAACAAGGGTGACGGTGACGACGAATTCAACTACTCAATCACCGCTGTTGAATACGATCCTAACAAGTATGATGAGATTGACTATGGCGTAAACATTGATGACAGACCGACAAGCATCGTCGATCCGGATAACATGCAGCCGCCAACGGATATTAAAGTCGGTTCCTACTCTCGTGTTGTTCAGGGTATGAGCGTTGAAACGATGGTTATTAGCTGGACTAAGGCGCAGTATGCGAGCATGTACGATGTTCAATGGCGTAAGGATAATGGAAACTGGATTAACATCCCGCGCACGCCAAACATTGAGGTTGAGGTTGAGGGGATTTACGCTGGAAACTACTTCGTTAGAGTGAGGTCTATTTCTAGCGGTCAAAACGTGTCGCCATGGTCGCCAGTGGTTAATGTTGGGCTAACTGGTAAGATTGGGGTTCCATCGGCACCAGTGAGCCTTACAGCCTCAACAACAGAGGTATTTGGAATTAGGGTTAAGTGGGGCATGCCGCCTGGCTCGGATGACACTGCATACATTGAGTTGCATCAGTCGCCGGACGGAACGGACGAAAACGCCAGCCTCATCACCATGATCCCATATCCACAGTTTGAATATTGGCATGCTGTTTTGCCAGCGGGTTACGTTAACTACTATAAAGCGCGAGCGGTTGACAGGATCGGCAACGTTTCAGATTGGACGCCTTTCGCACGCGGCATGGCTACGGATGACTTTGACGCCATCGCGGAAGTGGTCAAGATTGATATTGAGAACTCGGAAGGGTTTAAGGAGCTTGCTCAGAGTGCGATTGATTCGGCTCAGAAGATCAAAGACACGGCGCAGTCGATTATGCAAAACGCCATTGCGAATGATGCTGATGTTAAGCTTTTACGCAAAGAGTCAGGAACAAGATCGGCACAGTTCAAGCAAACTATCAGCTTGATTGCTGATGAGACTCAGGCGCGAGTTTCTCAGGTTACGGCGCTTGAGGCCAAGATTGACAACGATATAACCGCGCAGATCACCCAGGTTAACGAGGCTATCGCAACGGAGACGGAAACCAGGACGAACCAGGTTAACGCTCTTGACGCTAAGTTTGGCGACGTTAACGCAAACTTTACGCAGGTCAATCAGGCTATTGCAGATGAGACAAGCGCCAGGGTTTCGGCTGATAGCGCATTGAGTACGGCGGTTGGAAATAATACGGCGGCTATCGCTCAGAAACTTAGCTCTTGGGTGAATAACGGCTCCATCGGCGCGAGCTACACGATTGACTTGGGTATCAAGGTTGGAAATTCTGAGTACGGCGCAGGGATGAATATGCAGTTGGTATCCGTAAACGGCGTCACAAAGGCTCAAACAGTTTGGGATGTTGACCGTTTCGCGGTTGGTCGAATTGCTGGCGGTGCTCTTGCATCATTGCCATTCTTCATCGAAAACAACCAAGTTTTCATGCAGTCTGCAATCATCAAGGATGGCTCAATCAGTAACGCCAAGATCGGTAACGTGATTCAATCAAACAACTGGAACGGCTCCACGGTTGGATGGGCTATCACAAAGAGCGGGGCGGCAACGTTTAACGGCGTTATCGTTAGGGGCAACATCAGCGCCACGGCTGGTCAATTCAGCTTTACAGGGAATTCCGGCGTGAGTATTGATAGCAATGGGGTTACAATCAATCTTAGTGGTGGTGGTCGCATCGTTTTAGGTACGTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
834d6fc610feaf7db87aaaf8029b6baa6b0d35c9ead21a5622d0eb385cea1672
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7718
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of YP10S2 bacteriophage Altinok,I., Ozturk,R.C., Ture,M., Ustaoglu,D. and Cebeci,A. 2023-03-01 — GenBank