Protein

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Genbank accession
XYL02400.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MPIAMIDNIVASARSSSYDWNASKAALADSLNTVTTRTLDKIFEGNKSYRSQQDRQKLLRSSAAPCSVVYGKTRTSGLLAFLEQDRDRTLHCAIVLANHSLEGIEDILIDGNPISSYGDLVSWELHNDRKTSDPFMGTHCPSWSPDMIGRGISWLRVSFRFDPNKFPFGLPNVTLIKVGKKCYDPRTSKEVYTNNAALVILDYLRTYLKCPDETINWESFKEAANICDEAVRNADGTSESRYTINGEFDTDEAPASIMAEMLKACGADLSYVAGKYGLLVGAYYGPATMTLSEDCVCGEVKIYPEASFDKRSNTITGRFTSPTKGYSETDFPSVFVPEWVEKDGERKIIDIDYRFVTSPYQAQRVSAIFLRRARAGRIIEVTCNMRGFKFKPGRYVTMDLPSIGIVGQEMRVLEWEFTKKGGVKVKLRQDAKEWNDATGQLPDSGDVDIPVSPSGVAQPQNFRYSVLQAGEVTHGVLAWDNVGTYAQNIVQVRKNGEIIWTAQTVEQFVRVEGLTKGSYTATVVATSYKGGVSPEAYCEFNIQAPEAPVSVEVKQGYFAITLIPHSRDLASVSTQYDFWTSGMTRLPDTSDATVTSKATRMGVGSTWTSEGLQNDKIYYWYIRTTNAFGSSQFVECAARCYTSIEDLMPQIDAEFKKTETYKELMSTLDSSIEDVENRVTELNKYMDGRVDEAFQQLGDRIGAVVTDTTQKFEDVNGNITALDKKLVAAQNKFTNDLNTESGRLASLIETTNKATTDLLNKKTEALDEKLVAAKGELVEQIGGVESGYLAGDKTLDGKINTQRTELDASILSTNQATVDLLNRTSETLDQKISQTNATVSKNYTTLDGKITTAKTDLNTLIANTNKATTDLLNQKTSALSEQITSARGEISTNKQAIADLDGKLTSTKTALDATISDTNKATVDLINGTASAIRQELAVAKQEIIDDVGDVSELRAAVATTSKAVTDLEGKVNAQWGTKIQVDSAGNKYVAGIQLGMEGSGGQVQSYFMVSANNFAVYNPGNGTATLAFAIKNNQAFLKDAFIENGTISSAKIAQEISSNNYDGNGYHKYGWYINKNGHAQFMDVWVKGNINASAGNFTGAVNATSGTFRGDVYANNGSFRGTIDATGGTFRGRVEASVIRANQFEGAIVAHRTYGDCPPVYNSQQRVCRWRWRYVDNVSGQGKNVTFFFKLNGTLSGSQLNVWIAGHQILAGKKYGNDNNGMCAVGITGLGEQTIDIIVEIYTPWSTSSVTGVTISCPTVIVSRSNSSFQGPWNESHD
Physico‐chemical
properties
protein length:1279 AA
molecular weight: 139971,94210 Da
isoelectric point:5,40473
aromaticity:0,08679
hydropathy:-0,35106

Domains

Domains [InterPro]
DC_0187
STR
1–789
DC_0187 G3DSA:1.10.287.1490
IPR053171
Unmapped
469–1119
IPR053171
IPR057587
ATT
547–651
IPR057587 DC_1281
IPR015406
RBD
957–1097
IPR015406
XYL02400.1
1 1279
Architecture
STR
ATT
STR
RBD
STR
RBD
STR 1-546 | ATT 547-651 | STR 652-789 | RBD 790-840 | STR 841-985 | RBD 986-1272 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYL02400.1
1 1279
Domain Start End Length (AA) Confidence
N-terminal 1 1076 1076 0,8415
Central domain 1077 1268 193 0,3890
C-terminal 1269 1279 10 0,9800
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1076
Central
1077-1268
C-terminal
1269-1279

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage FV3
[NCBI] 		3433636 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYL02400.1 [NCBI]
Genbank nucleotide accession
PV685965 [NCBI]
CDS location
range 28702 -> 32541
strand -
CDS
ATGCCAATTGCAATGATTGATAACATCGTTGCTTCTGCAAGATCTTCAAGCTATGACTGGAACGCATCCAAGGCAGCTCTGGCTGACAGCCTGAACACTGTTACCACCAGAACTCTGGATAAGATTTTCGAGGGTAACAAATCTTACAGAAGTCAGCAAGATAGGCAAAAGCTTCTTAGATCTTCTGCTGCACCTTGTTCTGTAGTGTATGGTAAGACACGCACATCTGGATTGCTTGCGTTTTTGGAGCAGGATAGAGACAGAACCCTTCATTGTGCTATTGTTCTTGCCAATCACTCTCTGGAAGGTATAGAAGATATACTTATCGACGGTAATCCTATTTCCTCGTATGGGGATTTGGTATCGTGGGAGCTACATAACGACAGAAAAACCTCTGATCCTTTCATGGGTACACACTGCCCATCGTGGTCACCGGACATGATAGGTAGAGGGATCAGCTGGCTGCGTGTTAGCTTCAGGTTTGACCCTAACAAGTTCCCTTTTGGGTTGCCAAACGTTACACTCATCAAGGTTGGTAAAAAATGCTATGATCCTCGCACCAGTAAAGAGGTGTATACCAATAACGCTGCCTTGGTGATTCTGGACTATTTAAGAACATACCTTAAATGTCCTGACGAAACCATCAACTGGGAGTCCTTCAAGGAGGCTGCCAACATATGCGACGAGGCTGTAAGAAACGCAGACGGAACCAGTGAGAGTCGTTACACCATTAATGGTGAGTTCGACACGGATGAAGCACCAGCAAGTATTATGGCAGAAATGCTGAAAGCTTGTGGTGCAGATCTTAGCTATGTAGCTGGTAAGTATGGTCTGCTGGTAGGTGCATACTATGGCCCAGCAACAATGACACTGAGTGAGGACTGTGTTTGCGGTGAGGTTAAGATCTATCCGGAAGCCTCCTTCGACAAAAGATCGAACACAATAACTGGTAGATTCACTAGTCCAACCAAAGGGTATTCTGAAACAGACTTCCCATCAGTGTTCGTGCCTGAGTGGGTGGAGAAGGACGGAGAAAGAAAGATAATTGATATAGATTATCGCTTTGTTACCAGTCCTTATCAGGCTCAGCGTGTTTCCGCAATATTCTTAAGACGTGCCAGAGCTGGCAGGATTATTGAAGTAACCTGCAATATGCGTGGTTTTAAATTTAAGCCTGGGCGTTACGTTACGATGGACCTTCCAAGTATTGGTATAGTGGGTCAAGAGATGAGGGTTCTTGAATGGGAGTTCACCAAAAAGGGTGGTGTCAAGGTAAAACTCCGTCAAGATGCTAAAGAGTGGAATGATGCCACAGGGCAACTTCCAGACTCTGGGGATGTAGATATCCCGGTATCTCCATCCGGTGTAGCTCAACCGCAAAACTTTAGATACTCTGTTCTTCAAGCTGGGGAAGTAACTCACGGTGTTTTGGCTTGGGACAACGTTGGGACTTATGCTCAAAACATTGTGCAGGTAAGAAAGAACGGAGAGATTATTTGGACAGCACAAACAGTCGAGCAGTTTGTCCGCGTAGAGGGATTGACCAAAGGGTCATACACAGCAACCGTGGTTGCAACATCTTATAAAGGTGGTGTATCTCCAGAAGCGTACTGCGAGTTTAACATTCAGGCACCTGAAGCTCCGGTTTCTGTAGAAGTTAAGCAGGGGTACTTTGCTATCACCCTGATTCCACACAGCAGGGACTTAGCAAGTGTAAGCACCCAGTATGACTTTTGGACATCTGGTATGACAAGGTTGCCTGACACAAGTGATGCAACCGTCACTTCAAAAGCCACCCGCATGGGTGTTGGTTCAACTTGGACATCTGAAGGTCTGCAGAACGATAAGATTTATTATTGGTATATTCGAACCACAAACGCTTTTGGAAGCTCCCAGTTTGTAGAATGCGCTGCACGCTGCTACACCTCTATTGAAGATTTGATGCCTCAAATAGATGCGGAATTTAAAAAGACAGAGACTTATAAAGAGTTGATGAGCACTTTAGATTCCTCTATTGAAGATGTTGAAAATCGTGTCACAGAACTTAACAAGTACATGGACGGAAGGGTAGATGAGGCATTCCAACAACTTGGGGATAGGATAGGCGCGGTAGTTACAGATACAACTCAGAAGTTTGAGGATGTCAATGGCAATATCACAGCGCTGGATAAGAAACTTGTTGCTGCACAGAACAAGTTCACCAACGATCTGAACACCGAAAGTGGAAGACTGGCATCCCTGATTGAGACAACCAATAAAGCAACCACTGATCTTCTGAACAAAAAGACAGAGGCTTTGGACGAGAAATTGGTTGCAGCCAAAGGGGAGTTGGTAGAACAAATAGGTGGTGTGGAGAGCGGATACCTTGCCGGAGATAAAACTCTAGATGGCAAGATCAATACCCAGAGAACGGAACTTGATGCAAGCATCTTAAGCACCAACCAGGCGACAGTGGATCTTCTCAACAGGACCTCTGAAACTCTGGATCAAAAGATCAGTCAGACAAACGCGACAGTATCTAAGAACTATACCACCCTTGATGGTAAGATAACTACCGCAAAAACTGATCTCAATACCTTGATTGCCAATACCAACAAGGCCACCACAGATTTGTTGAATCAGAAAACCTCTGCACTGTCGGAGCAGATAACTTCTGCACGTGGGGAGATTTCTACCAACAAACAGGCGATTGCGGATTTGGATGGTAAGCTGACCTCCACAAAAACAGCACTGGACGCTACAATCTCCGATACCAACAAAGCGACTGTGGATCTTATTAACGGCACAGCGTCAGCTATTCGTCAAGAACTTGCTGTTGCTAAGCAGGAGATCATTGATGATGTTGGGGATGTATCAGAGCTAAGAGCTGCAGTGGCTACAACATCTAAGGCTGTGACCGACTTAGAGGGCAAAGTAAATGCTCAATGGGGCACAAAAATACAGGTAGACTCCGCAGGGAATAAGTATGTGGCAGGTATCCAATTGGGCATGGAAGGTTCTGGAGGCCAAGTTCAATCATACTTCATGGTTAGTGCAAACAACTTTGCGGTATACAACCCTGGGAATGGAACAGCAACCCTTGCTTTCGCAATTAAGAACAACCAAGCGTTCTTGAAAGATGCCTTTATAGAGAACGGGACGATCTCTTCTGCCAAGATTGCACAAGAAATTTCGTCTAACAACTACGATGGCAACGGGTACCACAAATACGGTTGGTATATTAACAAGAACGGGCACGCCCAGTTTATGGATGTGTGGGTGAAAGGTAATATCAACGCTAGTGCAGGTAACTTCACAGGGGCAGTTAACGCCACCAGTGGTACCTTCCGTGGAGATGTTTATGCCAATAATGGTAGCTTTAGAGGCACCATAGATGCAACAGGAGGTACATTCCGTGGACGTGTAGAAGCTTCCGTTATCCGTGCTAACCAGTTCGAAGGTGCAATCGTTGCACATAGGACCTATGGTGACTGCCCTCCGGTATATAACTCGCAGCAGAGGGTTTGCCGTTGGAGGTGGAGATATGTGGACAACGTTTCAGGACAAGGTAAGAACGTAACATTCTTCTTTAAACTGAACGGAACCTTGTCTGGCTCCCAGCTTAACGTTTGGATAGCCGGGCATCAAATCCTTGCAGGTAAGAAGTACGGAAACGACAACAACGGCATGTGTGCGGTAGGGATAACAGGTCTTGGTGAACAAACCATAGACATTATCGTCGAGATATACACACCATGGTCAACGTCAAGCGTGACAGGAGTTACAATATCTTGTCCAACCGTAATAGTTAGTCGTTCAAACTCTAGCTTCCAGGGACCTTGGAACGAGTCTCACGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f8417dee8e0891eec796f8ddffc81c200136bdfad5afcac86a2d0eb854407adb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2924
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50