Protein

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Genbank accession
YP_009188468.1 [GenBank]
Protein name
endolysin
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTTNSEILNYANSLTNTFVTVPTNKWGSQCIVLVDKIVQHFTDKNLSYTNAIDALKKAKSNGFVVEMDGPNKAPKATAFYVIDTTAEGNPYGHIGMATTDSDGTEIIGLEANVDGFTDTNADGVNDQYQVGGPVRAVKRDWYADGSLFVSGTNIKIGKVIGWFYLPTDKKGEPMGVKNVNGDIYSSLITSSRPEIFGSWGERDMKAIKYIVLHGTYGLSVQNAVDTWTVGGRDASAQYIIHDNQIVGCVGENFTAWHCGGTGAITNQNSIGVEHVNNRINGENSTFSAQTIETGAKLVAEICKRLGIAPSNKTIVPHRSVFATACPQAMDVPAYIDKVKQYYNGTQKKETPKPQPKETKSVASNEQTSARLLIFDEDLNGYKKGDYLLLNFDRGTYSKVNDKAEVDFIKKQYTGIQIEHVSKAYPAHVRYIQGFKLNKI
Physico‐chemical
properties
protein length:439 AA
molecular weight: 48131,56720 Da
isoelectric point:7,10529
aromaticity:0,09339
hydropathy:-0,38838

Domains

Domains [InterPro]
G3DSA:3.90.1720.10
RBD
3–137
G3DSA:3.90.1720.10 IPR036505 DC_2183
G3DSA:3.90.1720.10
RBD
3–125
G3DSA:3.90.1720.10 IPR002502
IPR051206
Unmapped
204–383
IPR051206
IPR036505
STR
204–329
IPR036505
IPR002502
STR
205–327
IPR002502
IPR036505
STR
205–360
IPR036505
IPR002502
STR
207–326
IPR002502
YP_009188468.1
1 439
Architecture
RBD
STR
RBD
RBD 3-137 | STR 197-360 | RBD 384-439
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009188468.1
1 439
Domain Start End Length (AA) Confidence
N-terminal 1 64 64 0,5122
Central domain 65 263 200 0,4904
C-terminal 264 439 175 0,2925
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-64
Central
65-263
C-terminal
264-439

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Str-PAP-1
[NCBI] 		1589270 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus parauberis
[NCBI] 		1348 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009188468.1 [NCBI]
Genbank nucleotide accession
NC_028666 [NCBI]
CDS location
range 7814 -> 9133
strand -
CDS
ATGACAACAAACAGCGAGATTTTAAACTATGCAAACTCGCTGACTAATACATTTGTGACAGTCCCCACAAACAAGTGGGGCTCACAGTGTATTGTGTTAGTTGATAAAATCGTGCAACATTTTACTGATAAGAATCTATCATATACAAATGCTATTGATGCTTTAAAAAAAGCAAAATCAAACGGTTTTGTAGTAGAAATGGATGGACCTAACAAAGCTCCAAAAGCAACCGCCTTTTATGTTATTGATACCACTGCTGAGGGTAATCCCTATGGGCATATTGGCATGGCAACGACAGATAGTGACGGAACTGAAATCATTGGTTTAGAAGCCAATGTAGACGGTTTTACAGATACTAATGCAGACGGTGTCAATGACCAGTATCAAGTCGGCGGACCAGTAAGAGCGGTTAAACGCGACTGGTATGCAGATGGTTCTCTATTTGTATCAGGAACTAACATCAAAATCGGTAAAGTCATTGGTTGGTTTTACTTACCAACTGATAAGAAAGGAGAGCCTATGGGAGTTAAAAATGTTAATGGAGATATTTACTCAAGTTTAATCACTAGCTCACGCCCTGAAATATTTGGAAGTTGGGGAGAGCGTGACATGAAAGCAATCAAATATATTGTATTACACGGAACGTATGGATTATCGGTTCAGAATGCAGTTGATACATGGACCGTTGGCGGAAGAGATGCAAGCGCACAGTACATTATCCATGACAATCAAATTGTAGGTTGTGTTGGCGAAAACTTCACAGCGTGGCATTGTGGAGGAACAGGAGCAATCACTAATCAAAATAGTATCGGTGTAGAACATGTAAACAATAGAATTAATGGAGAAAATTCCACTTTTTCAGCTCAAACAATTGAGACTGGGGCTAAGCTAGTAGCTGAAATTTGTAAACGTCTAGGAATTGCACCAAGTAATAAAACTATCGTACCTCATAGGTCAGTTTTTGCAACGGCATGCCCACAAGCTATGGACGTACCAGCGTATATTGATAAGGTTAAGCAATATTACAATGGCACACAAAAAAAAGAAACACCTAAACCGCAACCAAAGGAGACTAAATCAGTGGCATCTAATGAACAAACTAGCGCAAGGCTATTAATATTCGATGAAGATTTAAACGGATATAAAAAAGGCGATTACCTTTTACTAAATTTTGACCGTGGAACTTATAGCAAAGTAAATGATAAAGCAGAAGTTGATTTTATCAAAAAACAATATACTGGTATTCAAATTGAACATGTTAGTAAGGCTTACCCTGCTCACGTTCGATATATCCAAGGATTCAAACTTAATAAGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f993126fd35833ddc72230f3b26dc4fc131431b7aee728b83754e863b68cbea1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7658
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50