Protein

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Genbank accession
ATS93396.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDLNTRFSLYTAQEAADGVAASITQNSLGQWGGQNRRAVNFADPVDPQDLVNKRYFEDVYTPQLDVKVTEATNQANNAASSAATAQGYALAADNSADLAAALLATFKGQYLGALVSNPTLDGNGQPVTAGDLYFSTTENLMKVYTGSAWINAGSTVQSTIKRPVTPIVATAGQTVFPVSGGYDAPYILVFVNGVEVASPDVDVTNGSTIVFSSGLTAGDKVDYAAFGSFQVANPVIDGTSAADFIKTRNARLVTSIADLKALNKNTYNFVLVTGFYASGDGGGGFFLQVPTMPTNGIVQVGNDGGIWRLVVDRDYVSAKQLGARLDGSTDDSSLLNNAKSTLDALGKRLYIPSGVCRISTAITPPKAGVFGDSPQASIIQCNTCSAFLFPANFGLSRPACVIEKLGIQSYGNTCDGLYAFRAPGVASGASPVYNSGLTVRDVEIGTGGRFGGGFSLKDFFRVNVENIGMTDVSSAVLLTGSVVQAVFRNVTANGDNAPTVLNRYGFQTAAASYSSGTLGPEHISTWDCSFIRYTRGVQHDAGLMVSFNNTDLETFTHGFYLSQPCTVRGGISAPAPAASGTAAWIGLFKAISDFDVANGTLIDDLEINTLNTPGTPASSYGILIGNNVNKCVGTTIRSPRIRGNTSSMVGGIVANLAGGDIVIEDAIINGSVVTGTTVSVSNASYARVVGNRSNTGGTVNGSLSITDNGVGSIGDVRGNEFATITNTLNAYSGTWTPGTIPNGTPAATTVAVPGAVVGDKVVVGLSSLTGSANCIISGYVSSTGNVAVLLYNVSGASQTIPSGTLQVTVLKS
Physico‐chemical
properties
protein length:812 AA
molecular weight: 83713,47300 Da
isoelectric point:4,94558
aromaticity:0,08005
hydropathy:0,10259

Domains

Domains [InterPro]
DC_0126
ATT
1–132
DC_0126 DC_0706
IPR012334
STR
314–404
IPR012334
ATS93396.1
1 812
Architecture
ATT
STR
ATT 1-132 | STR 187-812
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATS93396.1
1 812
Domain Start End Length (AA) Confidence
N-terminal 1 331 331 0,9964
Central domain 332 722 392 0,9950
C-terminal 723 812 89 0,9882
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-331
Central
332-722
C-terminal
723-812

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage DU_RP_I
[NCBI] 		2041493 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATS93396.1 [NCBI]
Genbank nucleotide accession
MF979559.1 [NCBI]
CDS location
range 33914 -> 36352
strand +
CDS
ATGGACCTCAACACTCGGTTCTCTCTGTACACTGCTCAGGAGGCCGCTGATGGTGTTGCAGCATCCATCACTCAGAACTCCCTGGGGCAGTGGGGCGGCCAGAACCGCAGGGCCGTCAACTTCGCAGACCCGGTTGATCCACAAGACCTGGTGAACAAGCGATACTTCGAGGACGTGTACACACCTCAGTTGGACGTGAAGGTCACCGAAGCCACCAACCAGGCCAACAACGCGGCCTCCAGCGCCGCCACTGCGCAGGGCTATGCTCTCGCTGCGGACAACTCCGCGGACCTCGCTGCGGCCCTCCTGGCGACCTTCAAAGGCCAGTATCTCGGTGCCCTTGTATCTAACCCCACGCTGGACGGTAACGGCCAGCCGGTGACTGCTGGTGACCTCTACTTCAGCACCACCGAGAACCTGATGAAGGTGTACACCGGGTCCGCGTGGATCAACGCTGGGTCAACCGTCCAGTCCACCATCAAACGTCCTGTCACACCCATCGTGGCAACCGCAGGCCAGACCGTGTTCCCGGTGTCTGGTGGGTACGACGCCCCATACATTCTCGTGTTTGTGAATGGGGTTGAGGTGGCTTCTCCAGATGTGGACGTGACTAACGGCAGCACCATCGTATTCTCCAGCGGCCTGACTGCTGGAGATAAAGTGGATTACGCAGCGTTTGGTTCGTTCCAGGTGGCCAACCCGGTTATCGATGGGACCAGTGCCGCAGACTTCATCAAGACACGCAATGCCCGTTTAGTTACCTCTATTGCCGACCTGAAGGCCCTCAATAAGAACACCTACAACTTCGTTCTCGTCACTGGCTTCTATGCTTCAGGGGATGGTGGCGGCGGTTTCTTCCTTCAGGTTCCCACGATGCCCACCAACGGTATCGTTCAGGTCGGGAATGACGGAGGCATCTGGCGGTTGGTGGTTGATCGGGATTATGTTTCCGCGAAACAACTAGGTGCGAGACTGGACGGTTCAACGGATGACTCCTCTCTCCTGAACAACGCCAAGTCCACTCTCGATGCTCTTGGTAAGAGGCTGTATATCCCGTCTGGGGTTTGCAGAATCTCAACAGCAATCACTCCACCAAAGGCTGGTGTGTTTGGGGATAGTCCTCAAGCGTCCATCATCCAGTGCAACACCTGCTCTGCATTCCTATTCCCAGCAAATTTTGGGCTCTCTCGTCCGGCTTGTGTCATTGAGAAGTTGGGGATTCAGTCCTACGGCAACACCTGCGATGGGCTATACGCTTTCCGTGCCCCTGGGGTGGCATCTGGAGCATCGCCCGTCTACAACAGCGGCCTAACTGTTAGGGATGTTGAGATTGGTACGGGCGGACGATTCGGTGGCGGTTTCTCACTGAAGGACTTCTTCCGAGTGAACGTAGAGAACATTGGCATGACTGATGTGAGTTCCGCCGTATTGCTCACCGGGTCAGTTGTGCAGGCAGTATTCCGAAATGTCACCGCAAACGGTGATAACGCACCGACTGTTCTTAACCGGTATGGTTTCCAAACAGCCGCAGCTTCCTATTCCAGCGGTACGCTAGGTCCTGAACACATTAGTACGTGGGATTGCAGCTTCATTCGCTATACACGCGGTGTTCAACACGATGCTGGGCTCATGGTCTCGTTCAACAATACGGACCTGGAAACTTTCACACACGGCTTCTATCTCTCGCAGCCCTGCACTGTGCGTGGTGGTATTAGCGCCCCGGCTCCGGCAGCTTCAGGGACTGCTGCGTGGATTGGGCTTTTCAAAGCTATTTCTGATTTTGACGTAGCCAACGGCACTCTGATCGATGACCTTGAGATCAACACGCTAAACACCCCAGGAACTCCAGCCTCTTCGTATGGGATTCTCATTGGCAACAATGTGAATAAGTGCGTTGGTACTACAATCCGTAGTCCCAGGATTCGAGGTAACACTAGTTCAATGGTCGGTGGGATTGTCGCTAATCTAGCTGGAGGTGACATCGTTATCGAGGATGCCATCATCAACGGCAGTGTGGTTACTGGAACTACGGTGTCTGTGAGCAATGCTTCCTATGCAAGGGTTGTGGGCAATCGAAGTAACACCGGTGGGACTGTAAATGGTTCCCTGTCAATCACAGATAACGGTGTTGGTTCCATTGGTGATGTTCGTGGAAATGAGTTTGCCACCATTACCAACACCCTCAATGCCTATTCCGGTACATGGACGCCTGGAACAATTCCTAACGGAACACCAGCAGCAACAACGGTGGCCGTCCCTGGCGCAGTGGTTGGTGACAAAGTAGTGGTCGGCCTTTCCAGCCTGACCGGATCGGCCAACTGCATCATTTCCGGCTATGTGTCTTCCACCGGAAATGTGGCTGTCCTGTTGTATAACGTCTCTGGTGCATCACAGACGATTCCCTCCGGGACTCTCCAGGTAACAGTCCTCAAGTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7e73551987e17b13b00b2e6e6802567d825b5de77cefa7d42d16e4a00f239cf9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7986
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage (DU_RP_I) infecting Ralstonia solanacearum Park,T.-H. 2017-09-30 — GenBank