Protein

View in Explore
Genbank accession
QBX26472.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,66
Protein sequence
MSNLEEFAQAVGRDVKVLNQKPEPRLTLTGNTLGIAGGNNVTLPLPDNVGQEIRGTGSPEGRITAEIGTTYVDVNVTNGALKWIKESGNGNTGWRVLIGDTGWRILNSVSKLGNSFVKIRRVNNLVLYQFGGLQWGWFGIVRRGGQGYSSQSSDVERNCFIVFRDSIPTGFRTQSSLIGNIYNDNGIVYGTWYVGGAGDQNHLRFQFLNPVPTDRDIGDIRVSAISYLTDEPWPTTLP
Physico‐chemical
properties
protein length:238 AA
molecular weight: 26107,94060 Da
isoelectric point:7,82512
aromaticity:0,09664
hydropathy:-0,30504

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX26472.1
1 238
Domain Start End Length (AA) Confidence
N-terminal 1 98 98 0,8669
Central domain 99 227 130 0,0015
C-terminal 228 238 10 0,9919
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-98
Central
99-227
C-terminal
228-238

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan326
[NCBI] 		2548108 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus mitis
[NCBI] 		28037 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX26472.1 [NCBI]
Genbank nucleotide accession
MK448908.1 [NCBI]
CDS location
range 39379 -> 40095
strand +
CDS
ATGAGCAATTTAGAAGAATTTGCTCAGGCGGTTGGCCGTGATGTGAAAGTGCTGAATCAAAAGCCTGAACCAAGGCTGACCTTGACAGGAAATACCCTCGGCATCGCTGGGGGTAATAATGTCACTCTACCGCTACCAGATAACGTAGGGCAAGAAATCCGTGGCACTGGCTCACCAGAAGGACGGATCACTGCCGAAATAGGGACAACCTATGTAGATGTCAATGTCACGAACGGCGCTTTAAAATGGATTAAAGAGAGCGGAAATGGTAACACTGGCTGGCGTGTACTTATTGGTGATACTGGATGGAGAATACTTAACTCAGTTTCAAAACTAGGAAATTCGTTTGTAAAAATAAGACGCGTTAACAATCTGGTCTTATATCAATTTGGAGGTCTTCAATGGGGCTGGTTCGGAATTGTAAGACGTGGTGGTCAAGGATATTCTTCTCAATCATCAGATGTTGAAAGAAATTGTTTTATCGTTTTTAGAGATAGTATACCTACAGGGTTTAGAACGCAATCATCCTTAATTGGTAATATATATAACGATAATGGAATCGTGTACGGTACATGGTATGTAGGAGGAGCTGGAGACCAAAATCATTTAAGATTCCAATTCTTAAATCCTGTACCAACAGATCGAGATATTGGAGATATTCGTGTGAGTGCCATCTCATACTTGACAGATGAGCCTTGGCCGACAACGTTGCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
22398f2257aa79a55902253789958ccbbc93b22d2a87d684fb51cfcbd16cf649
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7838
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank