Protein

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Genbank accession
WAX24465.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,95
TSP
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,53
Protein sequence
MTGIIVTTPPSVELPPSNVPNAPANLPGVTYQYALLNLPQTWGALQTFPVGTISINGSDIVGTIPVTRFNGGTGASSSTFLRGDGTWATPAGGGGSLTVGTSTISGGTSGRVLYDNAGVLGEYTVSGTGSVALTVSPTFTTPNLGTPSAAVLTNATGLPLSTGVTGNLSVNNLNSGSSASSSTFWRGDGTWATPAGSGVTASGTNIFGGSGAGTSLTSSPQNVLLGSNAGHAITSGSGENIAIGDSAGQAITTGTQNTIVGGLAGAAVTSDTGHTLVGYQAGLVMNGTGSQWNTFIGHASGIRATTAQSCIAVGRAAGQGIVSDNYCTVMGHAAMFLNNGGACNGIIAIGDSAAGADVTSGSSNWAGSGLTYFGAINDTNCNYIGRYTGKSTVAGRTNSHAIGALARIPVRDNAIVLGHAIVAVQTAGRYWDGFQRTDITANAGLTFTIANMNAGLIIRSGTLSGGVNDTTDTAANIVASGPGQNCEVPCSLEFSYGNNTTQTVTVVGGTGVAVSSLGLGGAVAAGALAKFRIIIGNSTSGTESVSLFRVG
Physico‐chemical
properties
protein length:551 AA
molecular weight: 54141,26310 Da
isoelectric point:5,81585
aromaticity:0,05808
hydropathy:0,18330

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WAX24465.1
1 551
Domain Start End Length (AA) Confidence
N-terminal 1 187 187 0,3753
Central domain 188 413 227 0,9081
C-terminal 414 551 137 0,9834
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-187
Central
188-413
C-terminal
414-551

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage ppBjS10J-1
[NCBI] 		3003365 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAX24465.1 [NCBI]
Genbank nucleotide accession
OP596615.1 [NCBI]
CDS location
range 10953 -> 12608
strand -
CDS
ATGACCGGAATCATCGTCACCACGCCGCCATCTGTCGAGCTTCCGCCGAGCAACGTTCCGAACGCTCCTGCGAACCTGCCCGGCGTCACCTATCAATATGCGCTGCTCAATCTCCCCCAGACGTGGGGCGCGCTTCAGACGTTCCCGGTCGGGACGATCTCCATCAACGGCAGCGACATCGTGGGGACGATCCCCGTAACCCGCTTCAATGGCGGGACCGGGGCTTCGTCCTCCACATTCCTTCGTGGTGACGGGACGTGGGCTACGCCGGCCGGTGGTGGTGGCAGCCTGACGGTCGGCACCAGCACGATTTCGGGCGGCACCAGCGGTCGTGTCTTATACGACAATGCCGGCGTGCTTGGAGAGTATACCGTCAGCGGGACCGGAAGCGTAGCGCTAACGGTCAGCCCGACGTTCACAACTCCGAATCTCGGGACGCCTTCGGCCGCTGTTCTGACCAACGCAACCGGCCTGCCGCTTTCTACTGGCGTAACCGGCAACCTGTCGGTCAACAATCTCAACAGCGGGTCGAGTGCGAGCTCGTCGACCTTCTGGCGCGGTGATGGAACGTGGGCAACGCCGGCCGGGAGCGGCGTTACGGCGTCCGGCACGAATATATTTGGCGGCTCTGGGGCTGGAACAAGCCTCACGTCCAGCCCGCAAAACGTTCTCCTCGGATCGAATGCCGGCCATGCGATAACAAGCGGGAGCGGCGAGAATATTGCGATTGGTGACAGCGCAGGGCAGGCCATCACGACGGGCACTCAGAATACCATCGTCGGCGGCTTGGCTGGCGCAGCGGTCACCAGTGACACCGGGCATACTTTAGTCGGCTATCAAGCCGGCCTGGTGATGAACGGAACGGGCTCGCAGTGGAATACGTTTATCGGTCATGCCTCCGGCATTCGGGCAACGACTGCACAGAGCTGCATTGCTGTCGGCCGCGCGGCGGGGCAAGGCATCGTCAGCGACAACTACTGCACGGTTATGGGCCACGCCGCGATGTTCCTCAACAATGGGGGTGCCTGCAACGGCATTATTGCGATTGGTGACAGCGCAGCCGGGGCCGACGTCACGTCCGGCTCTTCGAATTGGGCCGGATCTGGCCTGACCTACTTCGGCGCGATCAATGACACAAACTGTAACTATATTGGACGGTATACCGGCAAGTCGACCGTGGCCGGCCGCACGAATTCCCATGCCATCGGAGCTCTCGCACGCATTCCGGTGCGGGATAACGCAATCGTTCTCGGGCATGCGATTGTTGCGGTGCAAACGGCCGGGCGATATTGGGATGGCTTTCAGCGAACAGACATCACGGCGAACGCTGGCCTGACCTTCACAATTGCAAACATGAATGCCGGACTGATCATCCGCAGCGGAACGCTAAGCGGCGGTGTCAATGACACGACCGACACGGCGGCAAATATCGTTGCAAGCGGTCCTGGCCAGAATTGCGAAGTGCCGTGCAGTCTCGAGTTCAGCTACGGCAACAACACCACGCAGACTGTTACCGTGGTTGGCGGGACCGGCGTGGCGGTGAGCAGCCTGGGGCTCGGCGGGGCCGTTGCGGCGGGCGCGCTTGCGAAGTTCAGGATCATTATCGGCAACTCAACGTCCGGAACGGAATCCGTTTCGTTGTTCCGGGTCGGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5e0e4a4fdc2cb39ba5d428cd79c79e4231fcb57a285d832dc905a3d5c152bab3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7063
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Spontaneously produced lysogenic phages are an important component of the soybean Bradyrhizobium mobilome Joglekar,P., Ferrell,B.D., Jarvis,T., Haramoto,K., Place,N., Dums,J.T., Polson,S.W., Wommack,K.E. and Fuhrmann,J.J. — — GenBank