Protein

View in Explore

Genbank accession

YP_009217872.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,91

Evidence RBPdetect2

Probability 0,96

Protein sequence

MSTKFKTVITTAGAAKLAAATMPGGKKINLNVMAVGDGGGKLPEPDAGQTQLVNEVWRHALNKISQDNRYSNYIVAELVIPPEVGGFWMRELGLYDDEGTLIAVANMAESYKPELAEGSGRAQTCRMVIIVSSVESVALSIDSTMVMATQDYVDDRLAEHEKSRRHPDATLKEKGFTQLSNATDSESETLAATPKAVKAAYDLADAKYTAQDATTTRKGIVQLSSVTDSNDENQAATPKAVKIAMDNANKRLAKERNLADLTNIQQARQSLQLGNSATLNVGTTPDTVAAGDDTRIITTKKAIDDTQIGLGAQPVMWVSSADDLSSLPSGARRFASNKAPATILPVNDYVFLEVIAKRDCVDGCAVLITDSIGNTWIGARWDATNGSGFTWRPLMSCPPGVPLPWPSDTIPAGYALMQGQVFDKNVYPLLAIAYPSGTIPDMRGWTIKGKPVSGRAVLSQELDGNKSHSHSARAQDTDLGAKATSSFDYGTKSSDTTGGHNHSAGGLYGGDSIGGKTRVQRDGNNQLTSWNGDHAHTTWIGPHEHSVYIGPHGHVVIVDADGNAETTVRNIAFNYIVRLA

Physico‐chemical properties

protein length:	580 AA
molecular weight:	61883,57200 Da
isoelectric point:	5,83830
aromaticity:	0,05862
hydropathy:	-0,33224

Domains

Domains [InterPro]

IPR022225
ATT
1–151

IPR022225 IPR005068 IPR005068 SSF88874

DC_1371
STR
1–365

DC_1371 IPR037053

IPR051934
Unmapped
396–580

IPR051934

IPR011083
ATT
400–447

IPR011083

SSF88874
STR
400–579

SSF88874

YP_009217872.1

1 580

Architecture

ATT

STR

ATT

STR

ATT 1-151 | STR 152-365 | ATT 392-448 | STR 449-579 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR022225	ATT	DC_0271	1	151	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
DC_1371	STR	DC_1371	1	365	Novel HMM	DC_1371	Central	Low	Positional only	130 proteins / 130 hits
IPR005068	STR	DC_0738	170	211	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR005068	STR	DC_0738	214	254	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
SSF88874	STR	SSF88874	392	579	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	395	448	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR051934	Unmapped	-	396	580	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR011083	ATT	DC_0235	400	447	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
SSF88874	STR	SSF88874	400	579	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage SEN1 [NCBI]	1647455	Uroviricota > Caudoviricetes > Peduoviridae > Eganvirus SEN1 >
Host	Salmonella enterica subsp. salamae [NCBI]	59202	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Genbank protein accession

YP_009217872.1 [NCBI]

Genbank nucleotide accession

NC_029003.2 [NCBI]

CDS location

range 11446 -> 13188
strand +

CDS

ATGAGCACGAAATTTAAAACCGTTATCACCACTGCCGGAGCCGCTAAGCTTGCTGCAGCCACCATGCCGGGCGGTAAGAAAATAAATCTTAACGTTATGGCTGTTGGTGACGGCGGCGGAAAGCTGCCGGAGCCTGATGCCGGTCAGACGCAGCTTGTTAATGAGGTCTGGCGTCATGCTCTGAATAAAATCAGCCAGGACAACCGGTACAGTAATTACATTGTGGCCGAGCTGGTTATTCCGCCGGAGGTGGGCGGCTTCTGGATGCGTGAGCTTGGCCTTTACGACGATGAAGGGACGCTGATTGCTGTTGCCAATATGGCCGAAAGCTACAAGCCAGAACTGGCTGAGGGCTCAGGGCGTGCGCAGACATGCCGCATGGTCATTATTGTCAGCAGTGTCGAGTCTGTGGCGCTGTCCATTGACTCAACGATGGTGATGGCGACGCAGGATTATGTCGACGACAGGCTCGCCGAACATGAAAAATCCCGTCGTCATCCTGATGCCACTCTTAAAGAAAAAGGGTTTACTCAGCTCAGTAACGCGACTGACAGCGAGTCTGAAACGCTCGCAGCGACGCCGAAAGCTGTTAAGGCAGCATATGATCTTGCTGACGCGAAATATACGGCTCAGGACGCCACCACAACGCGTAAAGGGATTGTACAACTAAGTAGTGTAACCGACAGTAATGATGAAAATCAGGCTGCCACGCCAAAAGCGGTCAAAATTGCGATGGACAATGCCAACAAGCGCCTTGCCAAAGAACGCAACCTCGCTGACCTGACAAACATCCAGCAGGCCCGTCAGTCCCTCCAGCTTGGCAACAGCGCTACACTCAATGTCGGCACCACACCAGACACTGTAGCCGCAGGTGACGACACCCGCATTATCACCACCAAAAAAGCCATTGACGACACCCAGATCGGTCTTGGTGCTCAGCCCGTTATGTGGGTAAGCTCCGCCGATGATTTGAGCAGCCTGCCGTCTGGCGCACGCCGGTTTGCCAGCAATAAAGCTCCGGCAACAATATTGCCGGTAAACGATTATGTTTTCCTGGAAGTGATTGCCAAACGCGATTGCGTAGACGGCTGCGCCGTTCTGATAACAGACTCAATTGGTAACACCTGGATTGGCGCGCGCTGGGACGCAACCAATGGTTCCGGTTTTACCTGGCGTCCCCTGATGTCGTGTCCGCCCGGTGTTCCCCTTCCGTGGCCGTCTGACACTATCCCTGCCGGTTATGCCCTGATGCAGGGGCAGGTATTTGATAAGAACGTTTATCCCTTACTGGCAATAGCATATCCATCCGGCACTATTCCGGACATGCGAGGCTGGACAATCAAAGGTAAGCCTGTCAGTGGACGTGCGGTGCTGTCGCAAGAACTGGACGGTAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATACCGACTTAGGGGCGAAAGCTACCTCATCCTTTGATTACGGCACGAAGAGTTCCGATACAACAGGCGGTCATAACCATTCGGCTGGCGGACTATATGGTGGTGACTCAATCGGTGGAAAAACTCGCGTTCAGCGTGACGGAAATAATCAGTTAACAAGCTGGAATGGCGATCACGCACATACCACATGGATTGGCCCGCACGAACACTCCGTATACATCGGTCCACACGGACACGTCGTTATAGTGGACGCAGATGGTAATGCGGAAACCACGGTTAGAAACATTGCATTTAACTACATAGTGAGGCTGGCATAA

Genome Context

Tertiary structure

PDB ID

993b598d9d38774f567d0e3fc3e17ef49c25302661d9cd1197bc0e7a049da755

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7687

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Phages of Salmonella enterica subsp. salamae and subsp. diarizonae: novel phages with a mosaic genome structure and activity against pathogenic S. enterica subsp. enterica isolates	Pastekova,L., Bosak,J., Dedicova,D., Benada,O., Smarda,J. and Smajs,D.	—	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature