Protein

View in Explore
Genbank accession
YP_009816622.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MIDQNSQFFAILTNIGAAKQANADALGIPWKITQMGVGDAGGTDPIPSPTQTALINERRRAPLNHLKVDPQNAAVIIAEQIIPENVGGWWIREIGLYDADNDLVAVANCAPSFKPLLNQGSGRTQVVRMNLIVSNSANVELKIDPAVVLATRAYVLDQLKSYAPLFSPAFSGAPTAPTPPLFAHDQKLATTEYVRMALGSAARAISYTGNTVLDEPVIGSILVAGSHDRDFTWTTPNLSVLPTGASFHIVNISGSTLTLVQRTAADHYISADDPSGVAISYTIPNNVTATISKYQPGLWLISHVSRPTAALKGLVDGLIDGTKPAGKAVQLANSRKLTLSGQASGSVQFDGSSDVTIDVQLADSLALTGSPSAPTPAAFDRDSSIATTEYVRAALGSMAGAAVLTGDATLDAPLVGLTVVAGAHNREATWTTPQLSAIPQGASLRLVNLSGFTVTLVQRSTTDRYISATDPSGTATTYIIPNGTSISLTKYQASMWLVEATPSFPALRSSPGYQKLPSGLILQFGSVSIPPGTGESTGWATLPIAFPNGPLTVVPSLQYGGTSSSWYGFSVWSGSITPTAIACSLNSGSTPREVAGTVNYVAIGY
Physico‐chemical
properties
protein length:605 AA
molecular weight: 63077,49280 Da
isoelectric point:5,67307
aromaticity:0,06942
hydropathy:0,09950

Domains

Domains [InterPro]
DC_1371
STR
1–448
DC_1371 G3DSA:2.60.40.3940
IPR051934
Unmapped
5–156
IPR051934 IPR054075
IPR022225
ATT
6–152
IPR022225
YP_009816622.1
1 605
Architecture
ATT
STR
RBD
ATT 1-152 | STR 153-448 | RBD 507-605
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Dobby
[NCBI] 		2483611 Uroviricota > Caudoviricetes > Peduoviridae > Citexvirus dobby >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009816622.1 [NCBI]
Genbank nucleotide accession
NC_048109 [NCBI]
CDS location
range 15369 -> 17186
strand +
CDS
ATGATCGATCAGAATTCACAGTTCTTCGCCATCCTGACCAACATCGGCGCGGCCAAGCAGGCCAACGCCGATGCCCTTGGCATCCCGTGGAAGATCACCCAGATGGGCGTGGGTGACGCTGGCGGCACCGACCCGATTCCATCCCCCACCCAGACTGCGCTGATCAACGAGCGACGCCGGGCGCCGCTCAACCATCTCAAAGTGGATCCGCAGAATGCGGCGGTGATCATCGCCGAACAGATCATCCCGGAGAACGTCGGCGGCTGGTGGATCCGGGAAATCGGACTCTACGATGCCGACAACGACCTTGTCGCGGTCGCAAACTGCGCGCCCAGCTTCAAGCCATTGCTGAACCAGGGGTCGGGACGCACGCAGGTTGTACGCATGAACCTGATTGTCAGCAACTCCGCGAACGTCGAGTTGAAGATCGATCCGGCAGTGGTACTTGCCACGCGCGCCTATGTACTCGACCAGTTGAAGAGCTACGCCCCCCTCTTCTCACCGGCGTTCAGTGGAGCACCAACAGCTCCCACCCCGCCACTGTTCGCACACGACCAGAAGCTTGCGACTACCGAGTACGTCAGAATGGCCCTGGGTAGCGCCGCACGAGCAATCTCCTACACCGGCAATACGGTGCTGGATGAACCGGTAATTGGTTCGATCCTCGTCGCTGGCTCGCATGACCGCGACTTCACATGGACCACGCCGAACCTGTCTGTTCTACCAACTGGCGCGTCGTTCCACATCGTCAACATCAGCGGTTCGACGCTGACGTTGGTCCAGCGTACCGCTGCGGATCATTACATCAGCGCGGACGACCCGTCCGGCGTGGCAATCTCGTACACGATACCGAACAACGTCACCGCAACTATCTCGAAGTACCAGCCAGGCCTGTGGCTGATCAGCCACGTGTCACGCCCGACCGCTGCGCTGAAGGGCCTCGTGGATGGGCTGATCGACGGAACGAAGCCCGCAGGGAAAGCCGTGCAACTCGCGAACTCTCGCAAACTCACGCTGAGTGGCCAGGCCAGCGGCAGCGTTCAGTTCGATGGCTCGAGCGACGTAACGATAGATGTCCAGCTCGCCGATAGCCTCGCCCTGACGGGCTCCCCCAGCGCGCCGACGCCGGCGGCGTTCGATAGGGACTCGTCGATCGCCACGACCGAGTATGTGCGTGCCGCTCTCGGTAGCATGGCCGGCGCAGCGGTGCTGACGGGCGATGCTACCCTCGACGCCCCCCTCGTCGGCCTGACTGTGGTGGCCGGCGCACATAACCGAGAGGCGACGTGGACGACTCCGCAACTTTCGGCAATCCCACAAGGCGCATCGCTGCGCTTGGTCAACCTGAGCGGCTTCACCGTAACGCTGGTGCAACGCTCGACAACCGACCGCTACATCAGCGCAACCGACCCATCCGGGACTGCGACCACCTACATCATCCCCAACGGCACGTCGATTTCCCTCACGAAATACCAGGCGTCGATGTGGCTTGTCGAAGCCACCCCCTCCTTCCCCGCGCTGCGTTCGTCGCCGGGCTATCAGAAGCTTCCGAGCGGCCTGATTCTGCAGTTCGGCAGCGTCAGCATTCCACCTGGTACCGGTGAAAGCACCGGCTGGGCAACGTTGCCCATCGCATTCCCGAATGGTCCCTTGACTGTCGTGCCGTCGCTGCAATACGGCGGGACCAGCTCGAGCTGGTACGGGTTCAGCGTCTGGTCAGGGAGCATTACGCCCACTGCAATCGCCTGCTCACTGAACAGCGGTTCGACGCCGCGCGAGGTGGCCGGCACCGTGAACTACGTTGCAATCGGATACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
072a11524bc68548809e7835f0acbb810970f40887885b92e32c47fee3b6c5a1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8349
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of the phiCTX-like Pseudomonas aeruginosa phage Dobby isolated from a kidney stone Johnson,G. and Putonti,C. 2019-03-01 — GenBank