Protein

View in Explore
Genbank accession
XPB67200.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKVDGSLKSLLQGVSQQPARDRLPGQATLQENMSSDPITGLTRRPATDLVNKLLTSADIRGWHDFDTKDQSKFIASFYGGNVKVFDLNGIERTVTIDANAVQYLTTLGELRFNTIENDTYVVNRSKLVSMTSTVREYFNDKDRRQAFVIQVLGGQYSREYSVKINGVQYANFKVADGSVAAHIDQTRTKYIANQLFTQLVASSLASSWAIHLQDDIIVLWTDNANDYTITVNDDYGNTNIKANGMAVARNEDLPRFAPHNFVVRVAEKTDPETDIWFRFIVEGQEDNWDFNTLLFGQQGYWQETVAPDTPINFDASTMPHLLRYYPNDGTFKFMRATWAERAVGTTTSNPNPSFVDGRITDVGTFQGRLVFTSGPNVIMSRTNKEQDFWFGSVSAQAQSDPIDIRSKVEASTMQAIIQHNRDLVIFSNKGQFIVYGRTSLTPENAALVLTSAFEAELRAKPVGAGRNVFFATNFGTYTGIREFFVESGTDINDSRAITQHVKKYIRGRVTKLSSSSNYDTLLVQTDDDEGVVYWYQYIWTDTEKVQSSWSKLLFPSAVSYMFFDEETVYVVQKDGTDYYLTRMSLDVQASAAMEYHVHLDNRFDAFEVSRQFVLPYPYLRNLKLLAVQSTNCPNPGLLAPIQSVVFNPDFGYVVTLKSDMGGGDVIVGAQFKSTYRPTMPQVKDKDGVKVGTGNLVISKFKTSLAKTGEIIGRFLSKYGDGPEVRFNGRIVGAPDNQVGIQPLSDDTFTLPFGQKADLAEIEFFTESHLPLTMLDIEWEGQYMKRGKRISTGGE
Physico‐chemical
properties
protein length:795 AA
molecular weight: 89193,02790 Da
isoelectric point:5,40160
aromaticity:0,11321
hydropathy:-0,33019

Domains

Domains [InterPro]
IPR058003
TTP
1–790
IPR058003
XPB67200.1
1 795
Architecture
TTP
TTP 1-790 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPB67200.1
1 795
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9926
Central domain 140 338 200 0,0914
C-terminal 339 795 456 0,2496
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-338
C-terminal
339-795

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Oiolarie
[NCBI] 		3243728 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas taiwanensis
[NCBI] 		470150 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPB67200.1 [NCBI]
Genbank nucleotide accession
PP954862 [NCBI]
CDS location
range 16838 -> 19225
strand +
CDS
ATGGCTAAGGTTGATGGATCACTCAAGTCCTTGCTACAAGGCGTATCCCAACAGCCAGCCCGTGACCGGCTACCGGGTCAGGCGACATTGCAAGAGAACATGTCATCTGATCCGATCACCGGACTAACCCGACGACCAGCCACTGACTTGGTGAACAAGTTGCTGACTAGCGCGGACATTCGCGGCTGGCACGACTTCGACACGAAAGATCAGTCCAAGTTTATCGCCTCCTTCTATGGTGGCAATGTGAAGGTGTTCGACCTCAATGGTATCGAGCGCACTGTCACTATCGACGCTAACGCAGTACAGTATCTGACTACGCTTGGCGAACTACGCTTCAATACAATCGAGAACGACACGTATGTTGTGAACCGCTCTAAGCTGGTATCCATGACATCGACTGTTCGTGAGTACTTCAATGACAAGGATCGTCGTCAGGCGTTCGTCATTCAGGTTCTCGGTGGTCAGTACAGCCGCGAGTACAGCGTCAAGATCAACGGTGTTCAGTACGCGAACTTCAAAGTTGCTGATGGCTCCGTTGCTGCGCACATCGACCAGACACGTACCAAGTACATCGCGAACCAGTTGTTCACTCAGCTAGTCGCATCCTCTTTGGCTTCCAGTTGGGCTATCCATCTACAGGACGATATCATCGTACTTTGGACGGACAACGCTAACGACTATACCATCACGGTGAATGATGACTACGGTAACACGAACATCAAAGCCAATGGTATGGCAGTCGCCCGTAACGAGGACTTGCCACGGTTCGCACCGCATAACTTTGTAGTGCGCGTAGCCGAGAAGACCGATCCCGAAACCGACATCTGGTTCCGCTTCATTGTGGAAGGACAGGAAGACAATTGGGATTTCAACACTTTGCTGTTCGGTCAGCAGGGCTACTGGCAAGAGACAGTGGCACCCGACACGCCTATCAACTTCGATGCAAGCACCATGCCGCATTTGCTGCGCTACTATCCTAACGATGGTACGTTCAAGTTCATGCGTGCTACGTGGGCAGAACGGGCAGTTGGTACAACCACTAGCAACCCGAACCCATCCTTCGTGGATGGACGCATCACAGACGTTGGTACGTTCCAAGGCCGACTGGTCTTCACGTCTGGACCTAACGTCATCATGTCGCGCACGAACAAGGAACAGGACTTCTGGTTCGGCTCCGTGTCGGCACAGGCGCAGTCTGATCCTATCGACATCCGGTCTAAGGTGGAAGCCTCGACCATGCAGGCAATCATCCAGCATAACCGCGACTTGGTTATCTTCTCGAACAAGGGACAGTTCATTGTCTATGGACGAACAAGCCTTACGCCAGAGAATGCTGCACTGGTGCTTACATCCGCCTTTGAAGCAGAGCTACGAGCAAAGCCGGTTGGTGCTGGTCGGAACGTATTCTTCGCTACGAATTTCGGTACTTACACAGGTATCAGAGAGTTCTTCGTTGAGAGCGGAACAGACATCAACGACAGCCGAGCGATCACGCAGCACGTCAAGAAGTATATTCGCGGACGAGTTACCAAGCTCTCATCCAGTTCGAACTACGATACCCTTCTAGTTCAGACAGACGATGACGAGGGTGTGGTGTATTGGTATCAGTACATCTGGACAGACACTGAGAAGGTGCAGTCCTCTTGGAGCAAGCTGTTGTTCCCATCCGCAGTCTCGTACATGTTCTTCGATGAGGAAACCGTGTACGTGGTGCAGAAGGATGGAACCGACTACTACCTGACCCGTATGTCTCTCGATGTACAGGCCAGTGCTGCCATGGAATACCATGTGCATTTGGACAACCGTTTCGATGCGTTCGAAGTCAGCCGACAGTTCGTGCTGCCCTATCCGTATCTTCGGAACCTCAAGCTGCTAGCGGTCCAGAGTACCAACTGCCCTAATCCCGGTCTACTGGCCCCGATACAGAGCGTGGTATTCAATCCCGACTTTGGCTATGTGGTTACGCTCAAGAGCGACATGGGTGGTGGCGATGTAATCGTCGGTGCGCAGTTCAAGTCTACCTATCGTCCTACCATGCCGCAAGTCAAGGACAAGGACGGTGTTAAGGTCGGCACAGGCAATCTTGTGATCAGCAAGTTCAAGACCTCACTGGCTAAGACCGGAGAGATCATCGGGCGCTTCCTGAGCAAGTACGGTGACGGTCCAGAGGTTCGCTTCAATGGCCGTATCGTGGGTGCACCGGATAACCAAGTCGGTATCCAACCATTGTCTGATGACACATTCACCCTGCCCTTTGGACAGAAGGCAGACCTAGCGGAGATTGAGTTCTTCACTGAAAGCCATCTGCCTCTCACGATGCTAGACATCGAGTGGGAAGGTCAGTACATGAAACGCGGTAAACGCATTAGCACAGGCGGAGAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
921fbb374e6d7c5bbfd8a344b3220742d99d0be4380543869db366b7d7ea2408
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3113
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50