Protein

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Genbank accession
XXQ04805.1 [GenBank]
Protein name
tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MALVELITVKGFAESVGSVQELLQQPTSTTEQVLVRGWWPGSNSGGGVFYYDSNRDKSEHDGGTVISPTVPFGSAYADFLNGVGETNPTGKGCWVRVVDGDTYPEWFGAIGNNSFDCAPALQAALDYCSGKRRRSAQAGLMLRLRGGRYVFNTGLTYTWRLDNNIKDDGDMRRLSIEGDAPGSTYLIYNGPQTTPALTIKGGPDGGIYIRAEFKNFRLWRSLNLTRYLGTGISLVGAAVYTFTNVDLGIFNTGLDARDTLYGTFRNCDFSGNNQGVYMSLTSRSSPNSILFDRCMFGGCKVRGAYVINGGSVEFRGCTFEGIGTDGTGQALLYQGGPHEGGMGLTVDSCYFENNFVQFDLDISNGTTYSGTHVIKGNSFNRPNLARAPSSGSINLYSATATMRVLMQSNGFKGFNNYVASSSRPSYTVQSELVRVEDQGNFFMYDGERPRTNGFPVQGLDQSRVAAAARVNADGTLVSGFNVASVTKTGTGAYTVTFTRAIRANAVAVANPFNALAHACATVVGTGSVQVLTHSAANSVADTAFNVVVVGEVT
Physico‐chemical
properties
protein length:553 AA
molecular weight: 59151,25090 Da
isoelectric point:6,54253
aromaticity:0,10669
hydropathy:-0,16022

Domains

Domains [InterPro]
DC_0282
STR
2–553
DC_0282
IPR012334
STR
105–451
IPR012334
IPR011050
STR
118–422
IPR011050
IPR039448
ENZ
231–397
IPR039448
XXQ04805.1
1 553
Architecture
STR
STR 2-553
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXQ04805.1
1 553
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,9898
Central domain 116 446 332 0,9909
C-terminal 447 553 106 0,9836
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-446
C-terminal
447-553

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage Peggy
[NCBI] 		3442625 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXQ04805.1 [NCBI]
Genbank nucleotide accession
PV796109 [NCBI]
CDS location
range 42008 -> 43669
strand +
CDS
ATGGCGCTTGTTGAGTTGATTACAGTGAAGGGCTTTGCTGAGTCTGTTGGTTCTGTGCAGGAGCTGTTACAGCAGCCCACCAGTACCACGGAACAGGTACTGGTTCGGGGGTGGTGGCCCGGGTCCAATAGTGGTGGCGGTGTATTTTACTATGACAGCAATCGCGATAAGAGTGAGCATGACGGTGGGACTGTGATAAGCCCTACCGTCCCCTTTGGCTCGGCATATGCTGACTTCCTGAATGGGGTTGGGGAAACGAATCCCACAGGTAAGGGGTGCTGGGTACGTGTAGTGGATGGGGATACGTATCCAGAGTGGTTTGGGGCTATCGGTAATAACAGCTTCGACTGTGCCCCCGCCCTACAAGCTGCCCTCGACTACTGCTCCGGCAAAAGACGCAGGTCAGCGCAGGCGGGGCTTATGCTGCGATTACGCGGTGGGCGATACGTGTTCAATACCGGTTTAACATACACCTGGAGGCTTGATAACAATATCAAAGACGACGGGGATATGCGACGTCTTAGTATTGAGGGAGATGCCCCCGGTAGCACGTACCTGATTTATAACGGTCCGCAGACTACCCCTGCGCTCACTATTAAAGGTGGGCCAGATGGAGGTATCTATATCCGGGCAGAGTTCAAGAACTTCCGACTCTGGCGCTCTCTGAACCTCACCCGGTACCTGGGCACGGGTATAAGCCTGGTGGGTGCCGCTGTGTACACGTTCACGAACGTAGACCTGGGTATCTTCAACACAGGATTGGATGCACGAGATACGCTGTATGGTACATTCCGTAACTGCGATTTCAGCGGCAATAACCAGGGTGTGTATATGTCCCTGACTAGCCGCAGCTCGCCTAACTCTATCCTGTTTGACCGGTGCATGTTCGGCGGGTGCAAGGTGCGAGGTGCATACGTTATCAATGGGGGTAGCGTAGAGTTTCGGGGTTGCACCTTCGAGGGCATCGGAACAGACGGCACTGGGCAGGCCCTGCTGTATCAAGGTGGACCGCACGAAGGTGGGATGGGCCTGACCGTGGATAGTTGCTACTTCGAGAATAACTTTGTACAGTTTGATTTAGATATTAGCAACGGTACTACGTATTCAGGTACTCATGTCATTAAGGGTAACAGCTTCAACCGACCTAACTTGGCGCGCGCACCTTCTAGTGGAAGCATAAACCTCTACAGCGCCACTGCGACTATGCGGGTGCTTATGCAGTCCAACGGGTTCAAGGGCTTTAATAACTACGTGGCTAGCTCCTCCAGGCCTTCCTACACGGTGCAGAGCGAGCTTGTACGCGTAGAGGACCAAGGGAACTTCTTCATGTACGATGGGGAGCGCCCACGGACTAACGGGTTCCCGGTACAAGGCTTAGACCAGAGCCGAGTTGCGGCGGCTGCCCGAGTTAACGCAGACGGTACCCTGGTCTCTGGGTTCAACGTGGCAAGTGTAACCAAGACCGGTACTGGTGCTTATACTGTTACGTTTACCCGCGCAATTCGGGCTAATGCTGTTGCAGTAGCTAATCCATTTAATGCGCTGGCGCATGCCTGTGCAACTGTAGTGGGCACTGGCTCGGTGCAGGTGCTAACGCACAGTGCAGCTAACTCGGTGGCAGATACCGCGTTTAACGTGGTTGTGGTTGGGGAAGTAACCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
39c98cc6df164edb15f4d325373259cf52c1231d87041d550222954a24d36683
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9008
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a new Cronobacter phage Lone,A., Kropinski,A.M. and Anany,H. 2020-07-22 — GenBank