Protein

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Genbank accession
WPK38606.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MANEIGTATNFEDFFSKIVAFLTTNATLVAAGQAWQALRVRRDNIDTYTTSLPDSFTGNGRKQIHTFRYDPRSLNTNNPASNGSESFWYTNSGFSAGSSYGQWKLRQAREVKTVRIKAPIGSSYASYAPKSFRLQYSDDGTAWTTALTVSNAPNWSAGERRDFAVPGTPGSHLYWKIIWDATQVVSYIGWQELLLLEADGTVANHFGSEVILKALGNSGLDEIYTGIRAEYDSAAGWYNLFMNGYTGYDANEMSWFNQPGALPGYGAQYTRATPMVPLWNTTMPYWMVASGRSFRFCVKVGTNYEGGYLGFILPYATPNQYPYPLAVGGSLCPVNDSSRSAEWRYSYVSFAHGVYPGPGTQNYPESEANWATLYLRSPEGAWNYHGNRSSYGSSNSEGIGGPTVSSSPPYNVGINNAGLRNVWPHCMNGQWSSGLRPYRECLGGGYILQPCVLIQRSPAQVLGELEGTFAISGYQNSAENTTVFNGKTHVVFQNAYRNTIHEHWALSMD
Physico‐chemical
properties
protein length:509 AA
molecular weight: 56232,61980 Da
isoelectric point:6,51604
aromaticity:0,14145
hydropathy:-0,40530

Domains

Domains [InterPro]
DC_0072
STR
1–509
DC_0072
G3DSA:2.60.120.260
STR
70–187
G3DSA:2.60.120.260
IPR008979
STR
82–152
IPR008979
PF22633
RBD
83–163
PF22633
WPK38606.1
1 509
Architecture
STR
STR 1-509
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK38606.1
1 509
Domain Start End Length (AA) Confidence
N-terminal 1 41 41 0,1475
Central domain 42 240 200 0,7133
C-terminal 241 509 268 0,9505
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-41
Central
42-240
C-terminal
241-509

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Aergia
[NCBI] 		3092174 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK38606.1 [NCBI]
Genbank nucleotide accession
OR805291 [NCBI]
CDS location
range 17079 -> 18608
strand +
CDS
ATGGCAAACGAAATCGGAACCGCGACGAACTTTGAGGACTTCTTCAGCAAGATCGTCGCCTTTCTTACCACGAACGCGACCCTGGTGGCGGCGGGTCAGGCTTGGCAGGCGCTGCGCGTCCGCCGGGACAACATCGACACATACACCACCAGCCTCCCGGACTCCTTCACGGGTAACGGTCGGAAGCAAATTCACACCTTCCGCTATGATCCGCGGTCGCTGAACACGAACAATCCCGCCTCGAACGGTTCGGAGTCCTTCTGGTACACCAACTCAGGCTTCTCCGCCGGGAGCAGCTACGGTCAATGGAAACTGCGACAGGCGCGCGAAGTCAAGACCGTGCGCATCAAGGCCCCCATCGGGTCCAGCTACGCAAGCTATGCCCCCAAGTCCTTCCGGCTCCAATACTCGGATGACGGAACCGCCTGGACTACGGCCCTGACCGTCTCGAACGCGCCGAACTGGTCCGCCGGGGAGCGGCGGGACTTCGCCGTGCCCGGCACTCCCGGTTCGCACCTGTATTGGAAGATCATCTGGGACGCGACCCAGGTGGTGAGCTACATCGGGTGGCAGGAACTCCTCCTGCTCGAAGCGGACGGGACGGTTGCCAACCACTTTGGGTCGGAGGTCATCCTAAAGGCCCTGGGCAACTCGGGCCTGGACGAAATCTACACCGGCATCCGGGCGGAGTACGACAGCGCAGCGGGTTGGTACAACCTGTTCATGAACGGGTACACTGGCTATGACGCCAACGAAATGTCTTGGTTTAACCAACCGGGAGCCCTCCCGGGATACGGGGCGCAATACACTCGGGCAACCCCGATGGTGCCGCTGTGGAACACCACCATGCCGTACTGGATGGTGGCTTCGGGCCGCTCCTTCCGGTTCTGCGTCAAGGTCGGTACGAACTATGAGGGGGGCTATCTTGGTTTCATTCTCCCGTATGCTACGCCCAATCAATACCCGTACCCGCTCGCTGTCGGTGGTTCCCTCTGCCCCGTCAACGACAGCTCCCGGTCCGCGGAGTGGCGTTATTCATACGTGAGCTTCGCCCACGGCGTGTATCCCGGGCCGGGCACTCAGAACTACCCGGAAAGCGAAGCGAACTGGGCGACCCTTTACCTGCGCAGCCCGGAAGGAGCGTGGAACTACCACGGCAACCGTTCGTCCTACGGTTCGTCCAACTCCGAAGGCATAGGTGGTCCGACCGTTAGCAGCTCGCCTCCATACAACGTCGGCATCAACAACGCCGGTTTGCGCAACGTCTGGCCTCACTGCATGAACGGCCAGTGGTCCTCGGGCCTGCGCCCCTACCGCGAGTGCTTGGGCGGCGGGTATATTCTCCAGCCTTGCGTGCTGATTCAGCGGTCGCCTGCCCAAGTCCTCGGGGAGCTGGAGGGGACGTTTGCAATCAGCGGCTACCAAAACAGCGCGGAGAACACGACCGTGTTCAACGGCAAGACTCACGTGGTGTTCCAGAATGCTTACCGCAACACGATCCACGAGCACTGGGCGCTGTCGATGGATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b0b90f15c58715ba15f5054ee309f6b94abcfcbeda85857e93138d00f4573b92
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6358
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Paride can kill dormant, antibiotic-tolerant cells Maffei,E., Harms,A. and Humolli,D. 2024 38168031 GenBank