Protein

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Genbank accession
AWY02946.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MNKNRWVTVKTNDGDVELTDIPGLHFLEWTIPSVSTSANELEMEGVDGVLPGGNTFDPFELELKFYFDGTDSKDLNLFSQRMKGIINQRQPYYVVHSDMPRFKYACNTAQIEYDKITVADMTFSITFRCYKGYAESLYSTKDYSTSNSKFQFESGLLAEDDIQYSFKEYDFNVYNGGNDIIDPHNHHKLVIKINIDAPNGFKITNITNGTNFEYLKPIKANKTLVLDGIYPVIGKERVGVNTNHGIIILNKGKNHFEVTGNQIEKLNVSFDFNFLYR
Physico‐chemical
properties
protein length:277 AA
molecular weight: 31705,26180 Da
isoelectric point:5,39995
aromaticity:0,12996
hydropathy:-0,44477

Domains

Domains [InterPro]
G3DSA:2.40.30.200
ATT
12–134
G3DSA:2.40.30.200 DC_0197
IPR008841
STR
33–129
IPR008841
IPR008841
STR
33–140
IPR008841
AWY02946.1
1 277
Architecture
ATT
STR
ATT 12-134 | STR 135-277
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AWY02946.1
1 277
Domain Start End Length (AA) Confidence
N-terminal 1 275 275 0,7396
Central domain 276 275 1 0,0285
C-terminal 276 277 1 0,8674
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-275
Central
276-275
C-terminal
276-277

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage VB-SauS-SA2
[NCBI] 		2234082 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AWY02946.1 [NCBI]
Genbank nucleotide accession
MH356730 [NCBI]
CDS location
range 61012 -> 61845
strand +
CDS
TTGAATAAGAATAGATGGGTTACAGTCAAGACAAATGATGGAGACGTAGAATTAACAGATATCCCTGGATTACATTTCTTAGAATGGACAATTCCTTCTGTGTCTACGTCTGCAAATGAATTAGAAATGGAAGGTGTGGATGGTGTTCTCCCTGGAGGGAACACTTTCGACCCTTTTGAATTAGAATTAAAATTCTATTTTGACGGCACAGATTCTAAGGATTTAAATTTATTCTCACAAAGGATGAAAGGTATTATAAATCAAAGGCAACCATACTATGTAGTTCATAGTGATATGCCTAGATTTAAATATGCATGTAATACAGCACAAATTGAATATGATAAGATTACTGTTGCTGACATGACATTCTCTATAACTTTTAGATGTTATAAAGGCTATGCAGAATCATTATACAGCACAAAAGATTACAGTACAAGTAATAGTAAATTCCAATTTGAAAGTGGATTATTAGCAGAAGATGATATTCAATACAGTTTTAAAGAATATGATTTTAATGTATATAATGGGGGAAATGATATTATAGACCCTCACAATCATCATAAATTAGTTATTAAGATAAATATTGATGCTCCAAATGGTTTTAAAATAACAAATATAACAAATGGAACAAATTTTGAGTATCTAAAACCTATAAAGGCTAATAAAACATTGGTTTTAGATGGTATATATCCTGTAATAGGCAAGGAAAGAGTCGGTGTCAATACTAATCACGGCATAATAATATTAAATAAAGGGAAAAATCATTTTGAAGTAACTGGGAACCAAATTGAAAAATTAAACGTCTCGTTTGATTTTAATTTCTTATATAGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d898e2bb1635476baaa6708c7a7551bf2f078a38f4207540d3a45b29336cd0b0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9185
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence analysis of a novel Staphylococcus aureus phage sa2 Wang,J., Sun,H. and Ren,H. 2012-12-15 — GenBank