Protein

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Genbank accession
XYL02080.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,59
Protein sequence
MAKNEFLPFGTAANANVLPNADYQALPARASGFSSGVAKSEQLNTVWRQASVIASVIAQFIADNSGKDVIDDGNLVKLQTNLSEALLKNLKLGTAANKNVGASNGEIPDMSYFSNGSGYQSFPGGMTMQWGQVYTSQTPGNPVRVNLPIPFKQTVSSVVATRTSDTVSNTINSIAVSVNSLGYFDIRSMEASATISWVAIGY
Physico‐chemical
properties
protein length:202 AA
molecular weight: 21351,68720 Da
isoelectric point:6,21122
aromaticity:0,08416
hydropathy:-0,05347

Domains

Domains [InterPro]
DC_1450
STR
1–199
DC_1450
G3DSA:2.60.40.3940
RBD
113–202
G3DSA:2.60.40.3940
IPR054075
RBD
122–202
IPR054075
XYL02080.1
1 202
Architecture
STR
STR 1-202
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PbrM1EGY
[NCBI] 		3387282 Viruses >
Host Pectobacterium brasiliense
[NCBI] 		180957 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYL02080.1 [NCBI]
Genbank nucleotide accession
PQ676537.1 [NCBI]
CDS location
range 17675 -> 18283
strand -
CDS
ATGGCTAAGAATGAGTTTTTACCCTTCGGTACCGCGGCGAACGCCAACGTTTTGCCTAACGCTGATTACCAAGCGCTACCGGCGCGTGCATCTGGATTCAGTTCTGGTGTGGCGAAGTCAGAGCAGCTCAACACTGTGTGGCGTCAGGCATCCGTTATTGCAAGCGTAATAGCACAATTTATTGCTGATAATAGCGGTAAAGATGTTATTGATGATGGCAATTTAGTGAAGTTACAGACTAACTTAAGTGAAGCTTTATTAAAAAATCTAAAATTAGGCACGGCGGCGAATAAAAACGTAGGTGCTTCAAATGGCGAAATACCTGATATGAGTTACTTCAGTAATGGTAGTGGCTACCAATCATTCCCTGGAGGAATGACGATGCAGTGGGGGCAGGTGTACACCAGCCAAACTCCTGGCAATCCAGTTAGGGTAAATCTACCTATACCATTTAAACAAACAGTATCATCAGTTGTTGCAACAAGGACAAGTGATACTGTCAGTAACACCATTAATAGCATTGCCGTTTCGGTGAATAGTCTTGGTTATTTTGATATAAGGTCAATGGAAGCGTCGGCAACTATATCTTGGGTTGCGATCGGATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6f2d2ec0b5af185339948c528ae131c10928b1f3836e786eca957c6a6b1cef80
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9428
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel Pectobacterium brasiliense-infecting phage from Egypt with biocontrol potential against soft rot in vegetables Elhalag,K.M., Ahmad,A.A., Elsharkawy,M.M., Huang,Q. and Naser-Eldin,M.A. — — GenBank