Protein

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Genbank accession
AUR97459.1 [GenBank]
Protein name
pectin lyase fold/virulence factor
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSCSDFPTIQTAKTFKLDAETQNEVVTSDNDRTSPASDGKTKLTLKGFENQVDTLIAEGSQEITDAIENTIGKSYIGTWTQGVTTFATMNEYSDFNGITYKPKSGVTLPYTAQTSDPTTAPDNASVEPFSDVNTANLLQSVNLIADDIDVTADGGLVKRDISSRLNDELRAEDFGLVADWVSTGVGTDNSDALIDLIYYAKTNNIKVINFGSGTYRFTKSIVIETSGLQLVGQGMTSTILRFEPVSSDEVFFDLIGTSTNTAIRSMQLTEGNARTGTCVRISDDRSYAGANWKNSFTDVRIDGFKTGLWLWSEDQSDTNEQTHSSETTLLHCKIKNCLTGIRFSNIQSVNTTLVSTDIENDVSGENYTMVYDESGADFKVFGGSWIGKGRVYHGVINPAYSISWSGGNIAFYQTRFELRGDATDPVLAFPATSSSAFMNFIMNDTLMVNSTAGRSLCDFSSPVQVALTRASVLVAPLALHQYPSVGSTAVNGTDGLQSRGSFLIKDSSNILYQLETTAAPGFTYNQTYSCPVRIENNQGYTNGNHLRDSLFFNYQRTPESGTIGAGPALVSEKHFVKHNESESADVGNFPLKLPHGTTPTKLTVLKHPLVRSNANVVTWYLVKDADAWVNPLTFDVATDAITMGTVDLTGKSGYYEVDIDWTSTYLDRAFRSGDSKWLEGRMYITYSSILTGFLGVKYI
Physico‐chemical
properties
protein length:699 AA
molecular weight: 76348,83530 Da
isoelectric point:4,74130
aromaticity:0,09871
hydropathy:-0,26366

Domains

Domains [InterPro]
DC_1405
STR
3–678
DC_1405
IPR012334
STR
142–393
IPR012334
IPR011050
STR
190–408
IPR011050
AUR97459.1
1 699
Architecture
STR
STR 3-678 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR97459.1
1 699
Domain Start End Length (AA) Confidence
N-terminal 1 181 181 0,9922
Central domain 182 503 323 0,9543
C-terminal 504 699 195 0,9594
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-181
Central
182-503
C-terminal
504-699

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.239.O._10N.261.52.F6
[NCBI] 		1881233 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR97459.1 [NCBI]
Genbank nucleotide accession
MG592605 [NCBI]
CDS location
range 17914 -> 20013
strand +
CDS
ATGAGTTGTTCAGATTTCCCAACAATACAAACGGCAAAGACTTTCAAGCTCGATGCTGAAACACAAAATGAGGTCGTTACATCTGATAATGATCGAACATCACCAGCGAGTGACGGAAAGACAAAGCTAACGCTGAAAGGGTTTGAGAATCAAGTTGATACGCTCATTGCGGAAGGCTCGCAAGAGATTACAGATGCAATAGAGAACACTATCGGAAAGTCTTACATCGGCACTTGGACGCAGGGCGTCACTACATTCGCTACAATGAATGAATATTCTGATTTTAATGGAATTACTTATAAGCCGAAGTCAGGAGTTACACTCCCATACACAGCGCAAACATCAGACCCAACGACAGCGCCAGACAATGCAAGCGTTGAGCCTTTTAGTGATGTAAACACGGCAAATTTATTGCAATCAGTAAATTTAATTGCTGATGATATAGATGTAACAGCCGATGGTGGGTTGGTCAAGAGGGATATTTCATCTAGACTTAATGATGAATTAAGAGCCGAGGATTTTGGGCTTGTTGCGGACTGGGTATCAACAGGCGTAGGAACTGATAACTCTGACGCACTGATAGACTTAATATATTATGCAAAGACCAATAACATTAAAGTTATAAATTTTGGTTCAGGCACTTATAGATTCACCAAATCTATCGTTATCGAAACATCAGGTTTACAACTTGTTGGTCAAGGAATGACCTCAACAATACTTAGATTTGAGCCAGTAAGTTCTGATGAGGTTTTTTTTGACTTAATAGGAACATCGACAAATACAGCCATAAGATCAATGCAATTAACAGAAGGCAACGCCAGAACTGGAACATGCGTTAGAATATCTGACGACAGAAGCTATGCTGGGGCGAATTGGAAAAACTCATTTACTGATGTTCGTATAGATGGCTTCAAGACTGGACTGTGGTTATGGTCTGAAGATCAATCAGACACCAATGAGCAAACTCATAGCTCAGAAACAACGCTTTTACACTGTAAAATTAAAAACTGCCTTACAGGGATTCGTTTCAGTAACATCCAATCTGTTAATACAACGCTAGTCAGCACTGACATAGAAAATGACGTGAGCGGTGAGAATTACACAATGGTGTATGACGAATCAGGGGCGGATTTCAAAGTGTTCGGCGGCTCTTGGATCGGAAAAGGCAGAGTTTATCACGGAGTTATAAACCCTGCTTATTCTATTAGCTGGTCTGGGGGGAACATTGCATTTTATCAAACTAGATTTGAACTACGGGGAGATGCAACAGACCCCGTGCTGGCGTTCCCTGCCACGTCAAGCAGTGCATTTATGAACTTCATAATGAACGACACTCTAATGGTAAACAGCACGGCAGGTAGGTCACTGTGTGATTTTTCATCACCCGTACAAGTGGCGCTAACCCGCGCAAGCGTTTTGGTAGCACCGTTAGCATTGCACCAGTATCCGTCTGTAGGCTCTACCGCTGTTAATGGCACTGACGGCCTTCAATCACGTGGATCATTCTTAATAAAAGATTCTTCCAACATACTTTATCAGCTTGAAACCACTGCCGCTCCTGGATTTACATACAACCAGACATACTCATGCCCCGTGCGGATTGAGAACAATCAAGGATACACGAACGGCAATCATCTACGTGATTCACTTTTCTTTAATTACCAGAGAACACCAGAGAGTGGAACAATAGGTGCAGGACCAGCGCTTGTTTCTGAAAAACATTTTGTTAAGCATAATGAGTCTGAATCCGCTGACGTTGGAAATTTTCCATTAAAACTTCCACATGGCACTACACCAACAAAGCTGACGGTACTGAAACACCCGTTAGTTCGCAGTAACGCAAACGTTGTCACTTGGTATCTAGTTAAAGACGCTGACGCCTGGGTGAATCCTTTGACCTTTGATGTAGCAACTGACGCAATAACAATGGGTACGGTTGACTTAACAGGTAAGTCAGGTTACTACGAGGTCGATATTGATTGGACTAGCACATACTTAGACAGAGCATTCCGCTCTGGAGACTCTAAGTGGCTAGAAGGTCGAATGTACATTACCTACAGCTCGATTTTGACTGGGTTTCTTGGCGTTAAATACATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7af3df81e43e12e233ff219cb5244529da311e1345c75e1995d2c172cb1bb19b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7022
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank